RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 UPF2Q9HAU5 1272 aaKnown RBP13.85□□□□□ -0.19
PTCH1-218ENST00000548945 GKN1Q9NS71 199 aa13.85□□□□□ -0.19
PTCH1-218ENST00000548945 TDP1Q9NUW8 608 aa13.85□□□□□ -0.19
PTCH1-218ENST00000548945 ABI2Q9NYB9 513 aaPredicted RBP13.85□□□□□ -0.19
PTCH1-218ENST00000548945 CCDC39Q9UFE4 941 aa13.85□□□□□ -0.19
PTCH1-218ENST00000548945 USP24Q9UPU5 2620 aa13.85□□□□□ -0.19
PTCH1-218ENST00000548945 TRDMT1O14717 391 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 ATG13O75143 517 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 LDHAP00338 332 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 GARTP22102 1010 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 GRSF1Q12849 480 aaKnown RBP eCLIP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 BFSP1Q12934 665 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 ALCAMQ13740 583 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 RUNX3Q13761 415 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 L1TD1Q5T7N2 865 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 HEATR6Q6AI08 1181 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 MON1AQ86VX9 555 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 BRSK2Q8IWQ3 736 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 TMEM86AQ8N2M4 240 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 LRRC52Q8N7C0 313 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 TTC8Q8TAM2 541 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 CACTINQ8WUQ7 758 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 MRPS31Q92665 395 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 USP13Q92995 863 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 TRMT2BQ96GJ1 504 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 EPSTI1Q96J88 318 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 LOXL4Q96JB6 756 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 ACCSQ96QU6 501 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 ACBD6Q9BR61 282 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 MRPL44Q9H9J2 332 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 OLFML3Q9NRN5 406 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 UXTQ9UBK9 157 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 HELZP42694 1942 aaKnown RBP13.84□□□□□ -0.19
PTCH1-218ENST00000548945 CHD6Q8TD26 2715 aa13.84□□□□□ -0.19
PTCH1-218ENST00000548945 MYO16Q9Y6X6 1858 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 DCDC2BA2VCK2 349 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 HUS1O60921 280 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 PDCP20941 246 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 TXLNAP40222 546 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 RPL10AP62906 217 aaKnown RBP13.83□□□□□ -0.2
PTCH1-218ENST00000548945 PDGFRLQ15198 375 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 RRAGBQ5VZM2 374 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 USP49Q70CQ1 688 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 CEP68Q76N32 757 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 SV2BQ7L1I2 683 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 DYMQ7RTS9 669 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 PDCL2Q8N4E4 241 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 FAM160A2Q8N612 972 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-218ENST00000548945 MAB21L3Q8N8X9 362 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 C1orf127Q8N9H9 656 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 DDX1Q92499 740 aaKnown RBP13.83□□□□□ -0.2
PTCH1-218ENST00000548945 EXOC4Q96A65 974 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 DNAJC19Q96DA6 116 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 MYRFLQ96LU7 910 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 FAM213AQ9BRX8 229 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 SMG9Q9H0W8 520 aaKnown RBP13.83□□□□□ -0.2
PTCH1-218ENST00000548945 HPS4Q9NQG7 708 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 TMLHEQ9NVH6 421 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 C2orf42Q9NWW7 574 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 GDAP2Q9NXN4 497 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 ITGA11Q9UKX5 1188 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 CCL26Q9Y258 94 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 PCDHB13Q9Y5F0 798 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 SRPRBQ9Y5M8 271 aaKnown RBP13.83□□□□□ -0.2
PTCH1-218ENST00000548945 MORC2Q9Y6X9 1032 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-218ENST00000548945 PTPRDP23468 1912 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 KIAA1549LQ6ZVL6 1849 aa13.83□□□□□ -0.2
PTCH1-218ENST00000548945 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 PRPF40AO75400 957 aaKnown RBP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 AKAP3O75969 853 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 NOL4O94818 638 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 ADRB1P08588 477 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 DRD1P21728 446 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 POLR2BP30876 1174 aaKnown RBP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 TFAMQ00059 246 aaKnown RBP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 MYL7Q01449 175 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 SRSF5Q13243 272 aaKnown RBP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 CFAP221Q4G0U5 840 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 FBXO43Q4G163 708 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 INTS6LQ5JSJ4 861 aaKnown RBP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 FSTL4Q6MZW2 842 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 CC2D1AQ6P1N0 951 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 GAB3Q8WWW8 586 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 FUBP3Q96I24 572 aaKnown RBP eCLIP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 PKMYT1Q99640 499 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 PI4K2AQ9BTU6 479 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 IKZF4Q9H2S9 585 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 TMEM206Q9H813 350 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 RBAKQ9NYW8 714 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 FBXO2Q9UK22 296 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-218ENST00000548945 L1RE1Q9UN81 338 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 AGAP1Q9UPQ3 857 aa13.82□□□□□ -0.2
PTCH1-218ENST00000548945 FRMD3A2A2Y4 597 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 MYMKA6NI61 221 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 KIAA0391O15091 583 aaKnown RBP13.81□□□□□ -0.2
PTCH1-218ENST00000548945 EXTL3O43909 919 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 GCNT3O95395 438 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 ITGB3P05106 788 aa13.81□□□□□ -0.2
PTCH1-218ENST00000548945 PCSK1P29120 753 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms