RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 PSMD3O43242 534 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 STAG3L1P0CL83 205 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 MAP4P27816 1152 aaKnown RBP13.36□□□□□ -0.27
CHD4-211ENST00000544484 SPRP35270 261 aaPredicted RBP13.36□□□□□ -0.27
CHD4-211ENST00000544484 CTCFP49711 727 aaPredicted RBP13.36□□□□□ -0.27
CHD4-211ENST00000544484 SNX17Q15036 470 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 PLEKHH3Q7Z736 793 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 RNF180Q86T96 592 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 SHCBP1Q8NEM2 672 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 SLC20A1Q8WUM9 679 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 CARD9Q9H257 536 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 WDCPQ9H6R7 721 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 DDX4Q9NQI0 724 aaKnown RBP13.36□□□□□ -0.27
CHD4-211ENST00000544484 SLC39A10Q9ULF5 831 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 FZD1Q9UP38 647 aa13.36□□□□□ -0.27
CHD4-211ENST00000544484 SALL3Q9BXA9 1300 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 A0A087WZ62 844 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 TMEM150BA6NC51 233 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 DDNO94850 711 aaPredicted RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 SNRPAP09012 282 aaKnown RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 MMGT1Q8N4V1 131 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 FDXACB1Q9BRP7 624 aaPredicted RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 AGO4Q9HCK5 861 aaKnown RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 ADARB2Q9NS39 739 aaKnown RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 ZNF212Q9UDV6 495 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 USP15Q9Y4E8 981 aaPredicted RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 TNS2Q63HR2 1409 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 AP3B1O00203 1094 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 EIF3HO15372 352 aaKnown RBP eCLIP13.35□□□□□ -0.278e-7■■■□□ 17.7
CHD4-211ENST00000544484 GAS2O43903 313 aaKnown RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 PNPLA4P41247 253 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 SERPINB9P50453 376 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 CSE1LP55060 971 aaKnown RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 CENPCQ03188 943 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 LY6KQ17RY6 165 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 SLC47A2Q86VL8 602 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 ZNF286BP0CG31 522 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 RRM1P23921 792 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 ALDH1A3P47895 512 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 HARS2P49590 506 aaKnown RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 MYL6P60660 151 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 TEDDM1Q5T9Z0 273 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 CEP70Q8NHQ1 597 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 ERP27Q96DN0 273 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 RANBP17Q9H2T7 1088 aaKnown RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 PKP3Q9Y446 797 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 MYL2P10916 166 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 TMED1Q13445 227 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 Q4G0T1 1027 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 BOLA3Q53S33 107 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 PCNX4Q63HM2 1172 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 AP1ARQ63HQ0 302 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 PPIL6Q8IXY8 311 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 CASKIN2Q8WXE0 1202 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 PNKPQ96T60 521 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 DNAJC5Q9H3Z4 198 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.35□□□□□ -0.27
CHD4-211ENST00000544484 RGL2O15211 777 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 ZSCAN9O15535 394 aaPredicted RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 CENPPQ6IPU0 288 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 ZNF467Q7Z7K2 595 aaPredicted RBP13.35□□□□□ -0.27
CHD4-211ENST00000544484 EMC1Q8N766 993 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 KRT35Q92764 455 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 GPR63Q9BZJ6 419 aa13.35□□□□□ -0.27
CHD4-211ENST00000544484 ADGRA2Q96PE1 1338 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 SUPT3HB4E1H0 165 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 SUPT3HO75486 399 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 LSP1P33241 339 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 EPHX2P34913 555 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 MAPRE2Q15555 327 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 PTRHD1Q6GMV3 140 aaKnown RBP13.34□□□□□ -0.27
CHD4-211ENST00000544484 SGSM3Q96HU1 749 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 FCGRTP55899 365 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 ARHGEF7Q14155 803 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 ZRANB3Q5FWF4 1079 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 ANO5Q75V66 913 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 PGBD3Q8N328 593 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 ICA1LQ8NDH6 482 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 TFB1MQ8WVM0 346 aaKnown RBP13.34□□□□□ -0.27
CHD4-211ENST00000544484 TSPAN17Q96FV3 270 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 OSMRQ99650 979 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 CD274Q9NZQ7 290 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.34□□□□□ -0.27
CHD4-211ENST00000544484 CFAP73A6NFT4 308 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 RGS2P41220 211 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 ZNF484Q5JVG2 852 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 DENND5BQ6ZUT9 1274 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 SNX5Q9Y5X3 404 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 ITSN1Q15811 1721 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 SEC24DO94855 1032 aaPredicted RBP13.34□□□□□ -0.27
CHD4-211ENST00000544484 ODC1P11926 461 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 HSD17B3P37058 310 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 ALDH7A1P49419 539 aaKnown RBP13.34□□□□□ -0.27
CHD4-211ENST00000544484 NUDT18Q6ZVK8 323 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 ZNF571Q7Z3V5 609 aaPredicted RBP13.34□□□□□ -0.27
CHD4-211ENST00000544484 RPRD1AQ96P16 312 aaPredicted RBP13.34□□□□□ -0.27
CHD4-211ENST00000544484 APOL5Q9BWW9 433 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 OSBPL1AQ9BXW6 950 aa13.34□□□□□ -0.27
CHD4-211ENST00000544484 CYB561D2O14569 222 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms