RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CRYBG2	Q8N1P7	616 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	B3GALNT2	Q8NCR0	500 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	SHC3	Q92529	594 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	LPIN3	Q9BQK8	851 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	EDEM3	Q9BZQ6	932 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	ZCWPW1	Q9H0M4	648 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	PDCL3	Q9H2J4	239 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	NSUN3	Q9H649	340 aa	Known RBP	10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	CRTAC1	Q9NQ79	661 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	FAM49B	Q9NUQ9	324 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	ABI2	Q9NYB9	513 aa	Predicted RBP	10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	LMCD1	Q9NZU5	365 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	LUC7L2	Q9Y383	392 aa	Known RBP	10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	NME7	Q9Y5B8	376 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	PCDHB5	Q9Y5E4	795 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	IRAK3	Q9Y616	596 aa		10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	10.81	□□□□□ -0.68
CPSF7-221	ENST00000543545	GOLGA6L6	A8MZA4	724 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545		F8VZ95	297 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	RNF225	M0QZC1	329 aa	Predicted RBP	10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	PRRG1	O14668	218 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	THAP12	O43422	761 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	TGM5	O43548	720 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	CLASP2	O75122	1294 aa	Known RBP	10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	GLUD1	P00367	558 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	CALCA	P01258	141 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	PAEP	P09466	180 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	CCDC172	P0C7W6	258 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	VDR	P11473	427 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	ADORA2B	P29275	332 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	CASP14	P31944	242 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	ADCY1	Q08828	1119 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	SMARCB1	Q12824	385 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	ADGRE1	Q14246	886 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	ASIC2	Q16515	512 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	MGAT5B	Q3V5L5	792 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	SGO2	Q562F6	1265 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	TCEAL5	Q5H9L2	206 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	FIGN	Q5HY92	759 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	SFMBT2	Q5VUG0	894 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	TPGS2	Q68CL5	300 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	LLGL2	Q6P1M3	1020 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	RNF19B	Q6ZMZ0	732 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	FMNL3	Q8IVF7	1028 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	FAM71A	Q8IYT1	594 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	UBR7	Q8N806	425 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	C12orf29	Q8N999	325 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	SLC4A11	Q8NBS3	891 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	SPC24	Q8NBT2	197 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	ATAD1	Q8NBU5	361 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	ZNF461	Q8TAF7	563 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	MYCBPAP	Q8TBZ2	947 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	MYLIP	Q8WY64	445 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	MYLPF	Q96A32	169 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	CDX2	Q99626	313 aa	Predicted RBP	10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	CYP4F11	Q9HBI6	524 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	TMLHE	Q9NVH6	421 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	AFF4	Q9UHB7	1163 aa	Known RBP	10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	KIAA1257	Q9ULG3	409 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	CAPN11	Q9UMQ6	739 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	SLC27A5	Q9Y2P5	690 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545	ATP8B3	O60423	1300 aa		10.8	□□□□□ -0.68
CPSF7-221	ENST00000543545		A0A1W2PQJ5	194 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	WDR27	A2RRH5	827 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	LRRC53	A6NM62	1247 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	CLDN5	O00501	218 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	MED7	O43513	233 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	CCDC130	P13994	396 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	FER	P16591	822 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	BDNF	P23560	247 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	BRD2	P25440	801 aa	Known RBP	10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	GNA15	P30679	374 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	KRT9	P35527	623 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	FXR1	P51114	621 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	JAM2	P57087	298 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	ZBED6	P86452	979 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	DUSP4	Q13115	394 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	DUSP6	Q16828	381 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	CCDC142	Q17RM4	750 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	LIN9	Q5TKA1	542 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	FAM171B	Q6P995	826 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	ELMSAN1	Q6PJG2	1045 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	SCN4B	Q8IWT1	228 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	KREMEN2	Q8NCW0	462 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	SLC2A14	Q8TDB8	520 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	BAP1	Q92560	729 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	CYFIP2	Q96F07	1278 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	PCED1B	Q96HM7	432 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	CDCA3	Q99618	268 aa	Predicted RBP	10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	SEPT5	Q99719	369 aa	Predicted RBP	10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	B3GNT5	Q9BYG0	378 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	GPR88	Q9GZN0	384 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	NUCKS1	Q9H1E3	243 aa	Known RBP	10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	ACP6	Q9NPH0	428 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	ZNHIT6	Q9NWK9	470 aa	Known RBP	10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	HESX1	Q9UBX0	185 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	DPP7	Q9UHL4	492 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	MYO6	Q9UM54	1294 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	CNTN6	Q9UQ52	1028 aa		10.79	□□□□□ -0.68
CPSF7-221	ENST00000543545	MTCH2	Q9Y6C9	303 aa		10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms