RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 DRAP1Q14919 205 aaPredicted RBP18.23■□□□□ 0.51
LIG1-204ENST00000542460 NFE2Q16621 373 aaPredicted RBP18.23■□□□□ 0.51
LIG1-204ENST00000542460 TCEAL5Q5H9L2 206 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 FIGNQ5HY92 759 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 CACNA2D4Q7Z3S7 1137 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 SLC4A11Q8NBS3 891 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 MYCBPAPQ8TBZ2 947 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 IQCDQ96DY2 449 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 PKMYT1Q99640 499 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 NLRC4Q9NPP4 1024 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 CRTAC1Q9NQ79 661 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 CEP72Q9P209 647 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 MAFFQ9ULX9 164 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 TSC2P49815 1807 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 FOXN3O00409 490 aaPredicted RBP18.23■□□□□ 0.51
LIG1-204ENST00000542460 GLUD1P00367 558 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 PAEPP09466 180 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 KRT5P13647 590 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 ATF2P15336 505 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 FOSL2P15408 326 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 ORC1Q13415 861 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 LILRA6Q6PI73 481 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 RNF19BQ6ZMZ0 732 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 RBBP8NLQ8NC74 664 aaPredicted RBP18.23■□□□□ 0.51
LIG1-204ENST00000542460 C2orf15Q8WU43 125 aaKnown RBP18.23■□□□□ 0.51
LIG1-204ENST00000542460 HEXIM2Q96MH2 286 aaKnown RBP18.23■□□□□ 0.51
LIG1-204ENST00000542460 SPAG5Q96R06 1193 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 EDEM3Q9BZQ6 932 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 AFF4Q9UHB7 1163 aaKnown RBP18.23■□□□□ 0.51
LIG1-204ENST00000542460 KIAA1257Q9ULG3 409 aa18.23■□□□□ 0.51
LIG1-204ENST00000542460 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.23■□□□□ 0.515e-7■■■□□ 14.7
LIG1-204ENST00000542460 A0A0C4DFX4 3053 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 ITIH6Q6UXX5 1313 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 RNF225M0QZC1 329 aaPredicted RBP18.22■□□□□ 0.51
LIG1-204ENST00000542460 USP8P40818 1118 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 ZNF75DP51815 510 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 ZNF132P52740 706 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 HYAL1Q12794 435 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 MDH1BQ5I0G3 518 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 SPECC1LQ69YQ0 1117 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 C4orf50Q6ZRC1 276 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 VSTM4Q8IW00 320 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 FAM71AQ8IYT1 594 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 SLC22A17Q8WUG5 538 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 MRFAP1L1Q96HT8 127 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 LPIN3Q9BQK8 851 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 GPR88Q9GZN0 384 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 IGFLR1Q9H665 355 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 TMLHEQ9NVH6 421 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 DPP7Q9UHL4 492 aa18.22■□□□□ 0.51
LIG1-204ENST00000542460 MTMR11A4FU01 709 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 F8VZ95 297 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 JAM2P57087 298 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 ADCY1Q08828 1119 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 SPATA2LQ8IUW3 424 aaPredicted RBP18.21■□□□□ 0.51
LIG1-204ENST00000542460 C12orf29Q8N999 325 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 SPPL2BQ8TCT7 592 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 PCED1BQ96HM7 432 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 FUBP3Q96I24 572 aaKnown RBP eCLIP18.21■□□□□ 0.51
LIG1-204ENST00000542460 PGLYRP2Q96PD5 576 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 TTYH3Q9C0H2 523 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 PCDHB5Q9Y5E4 795 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 HCFC2Q9Y5Z7 792 aa18.21■□□□□ 0.51
LIG1-204ENST00000542460 PRUNE2Q8WUY3 3088 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 MYO9BQ13459 2157 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 A0A1W2PQJ5 194 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 NCK2O43639 380 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 SPATA31D3P0C874 917 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 ELF1P32519 619 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 STAT1P42224 750 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 CYP27A1Q02318 531 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 CCDC142Q17RM4 750 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 CFAP221Q4G0U5 840 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 SPATA31D4Q6ZUB0 917 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 TCEAL8Q8IYN2 117 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 MICALL1Q8N3F8 863 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 EFHBQ8N7U6 833 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 ATAD1Q8NBU5 361 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 KREMEN2Q8NCW0 462 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 MAFAQ8NHW3 353 aaPredicted RBP18.2■□□□□ 0.5
LIG1-204ENST00000542460 HDAC7Q8WUI4 952 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 MYLPFQ96A32 169 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 PLEKHA4Q9H4M7 779 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 GRPEL1Q9HAV7 217 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 ABCB6Q9NP58 842 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 HSFX1Q9UBD0 423 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 FBXW11Q9UKB1 542 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 MYO6Q9UM54 1294 aa18.2■□□□□ 0.5
LIG1-204ENST00000542460 CYP26A1O43174 497 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 VNN2O95498 520 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 PNMA6AP0CW24 399 aaPredicted RBP18.19■□□□□ 0.5
LIG1-204ENST00000542460 VDRP11473 427 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 CD19P15391 556 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 EPCAMP16422 314 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 GTF2F1P35269 517 aaKnown RBP eCLIP18.19■□□□□ 0.52e-10■■■■■ 37.3
LIG1-204ENST00000542460 SOX5P35711 763 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 BPIFB4P59827 614 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 DUSP4Q13115 394 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 KCNC3Q14003 757 aa18.19■□□□□ 0.5
LIG1-204ENST00000542460 SGO2Q562F6 1265 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms