RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ASB7Q9H672 318 aa16.69■□□□□ 0.26
CLSTN3-213ENST00000541953 TBC1D7Q9P0N9 293 aa16.69■□□□□ 0.26
CLSTN3-213ENST00000541953 L1RE1Q9UN81 338 aa16.69■□□□□ 0.26
CLSTN3-213ENST00000541953 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-213ENST00000541953 SLC26A4O43511 780 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 LRP3O75074 770 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 FGF19O95750 216 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 VEPH1Q14D04 833 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 TMEM196Q5HYL7 178 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 ERICH6BQ5W0A0 696 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 ZNF720Q7Z2F6 126 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 KBTBD6Q86V97 674 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 PDCL2Q8N4E4 241 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 SAAL1Q96ER3 474 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 PKMYT1Q99640 499 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 ST6GALNAC4Q9H4F1 302 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 KIF3AQ9Y496 699 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 CLIC4Q9Y696 253 aa16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 CNOT1A5YKK6 2376 aaKnown RBP16.68■□□□□ 0.26
CLSTN3-213ENST00000541953 MYMKA6NI61 221 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 KPNA7A9QM74 516 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 AXIN1O15169 862 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 POLR2BP30876 1174 aaKnown RBP16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 LONP1P36776 959 aaKnown RBP16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 PLCB2Q00722 1185 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 RUNX3Q13761 415 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 DDR2Q16832 855 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 C1orf228Q6PIY5 440 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 CEP68Q76N32 757 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 C1orf127Q8N9H9 656 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 RASSF8Q8NHQ8 419 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 SPPL2BQ8TCT7 592 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 POMGNT1Q8WZA1 660 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 ARRDC1-AS1Q9H2J1 176 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 DSEQ9UL01 958 aa16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 MAGED2Q9UNF1 606 aaPredicted RBP16.67■□□□□ 0.26
CLSTN3-213ENST00000541953 HELZP42694 1942 aaKnown RBP16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 RNF40O75150 1001 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 ITGB3P05106 788 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 CYP2F1P24903 491 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 HOXA6P31267 233 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 CNR2P34972 360 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 PTPAQ15257 358 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 LARP1BQ659C4 914 aaKnown RBP16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 FAM173BQ6P4H8 233 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 METTL23Q86XA0 190 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 DNAJC19Q96DA6 116 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 CLIC6Q96NY7 704 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 GCNAQ96QF7 691 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 HHIPQ96QV1 700 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 FAM213AQ9BRX8 229 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 FBXO2Q9UK22 296 aaPredicted RBP16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 SMC3Q9UQE7 1217 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 PCDHB5Q9Y5E4 795 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 PTPRJQ12913 1337 aa16.66■□□□□ 0.26
CLSTN3-213ENST00000541953 A0A087X0B3 334 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 GOLGA8IPA6NC78 632 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 GOLGA8JA6NMD2 632 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 TRDMT1O14717 391 aaKnown RBP16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 PRPF40AO75400 957 aaKnown RBP16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 SCP2P22307 547 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 KCNA4P22459 653 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 DDIT3P35638 169 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 TFAMQ00059 246 aaKnown RBP16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 TAF12Q16514 161 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 SV2CQ496J9 727 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 LMBRD2Q68DH5 695 aaPredicted RBP16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 TCEAL6Q6IPX3 200 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 BRSK2Q8IWQ3 736 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 THEM5Q8N1Q8 247 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 SYNPOQ8N3V7 929 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 C2orf15Q8WU43 125 aaKnown RBP16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 GAB3Q8WWW8 586 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 TCEAL3Q969E4 200 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 CYP2S1Q96SQ9 504 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 CBWD1Q9BRT8 395 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 TDP1Q9NUW8 608 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 SIX4Q9UIU6 781 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 AGAP1Q9UPQ3 857 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 CEP295Q9C0D2 2601 aa16.65■□□□□ 0.26
CLSTN3-213ENST00000541953 PTPRDP23468 1912 aa16.64■□□□□ 0.26
CLSTN3-213ENST00000541953 TULP1O00294 542 aaPredicted RBP16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 DCLK1O15075 740 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 RPP40O75818 363 aaKnown RBP16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 PAX3P23760 479 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 GJA4P35212 333 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 AVPR1AP37288 418 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 RAP1GAPP47736 663 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 GALK1P51570 392 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 ZNF77Q15935 545 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 SLFN12LQ6IEE8 588 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 MON1AQ86VX9 555 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 DCP1BQ8IZD4 617 aaKnown RBP16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 GLIS3Q8NEA6 775 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 TTC16Q8NEE8 873 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 DDX43Q9NXZ2 648 aaKnown RBP16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 GTF3C4Q9UKN8 822 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 WNT6Q9Y6F9 365 aa16.64■□□□□ 0.25
CLSTN3-213ENST00000541953 ZZEF1O43149 2961 aa16.63■□□□□ 0.25
CLSTN3-213ENST00000541953 SPEGQ15772 3267 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms