RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SPOCD1Q6ZMY3 1216 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 TRMT10CQ7L0Y3 403 aaKnown RBP14.55□□□□□ -0.08
RTN3-210ENST00000540798 HOOK3Q86VS8 718 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 HPDLQ96IR7 371 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 TJP2Q9UDY2 1190 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 DCAF8L1A6NGE4 600 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 HOXA11P31270 313 aaPredicted RBP14.55□□□□□ -0.08
RTN3-210ENST00000540798 LSP1P33241 339 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 ZNF268Q14587 947 aaPredicted RBP14.55□□□□□ -0.08
RTN3-210ENST00000540798 CNGA2Q16280 664 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 TAZQ16635 292 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 TXNRD3NBQ6F5E7 133 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 TTC39CQ8N584 583 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 ARFGAP1Q8N6T3 406 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 MCRS1Q96EZ8 462 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 CPXM1Q96SM3 734 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 PLEKHA5Q9HAU0 1116 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 DPP3Q9NY33 737 aa14.55□□□□□ -0.08
RTN3-210ENST00000540798 hCG_1818297A0A087WSY0 165 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 MBLAC1A4D2B0 266 aaPredicted RBP14.54□□□□□ -0.08
RTN3-210ENST00000540798 LIASO43766 372 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 MICAL2O94851 1124 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 F2P00734 622 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 HMGCRP04035 888 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 VDRP11473 427 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 CD19P15391 556 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 RFC1P35251 1148 aaPredicted RBP14.54□□□□□ -0.08
RTN3-210ENST00000540798 RBP5P82980 135 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 GUCY1A3Q02108 690 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 CROCCP2Q86T23 111 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 BARX2Q9UMQ3 279 aaPredicted RBP14.54□□□□□ -0.08
RTN3-210ENST00000540798 DCDC2CA8MYV0 355 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 CAND2O75155 1236 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 KRT1P04264 644 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 ERBB2P04626 1255 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 CETN2P41208 172 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 CDKN2BP42772 138 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 GPD2P43304 727 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 PPP2R2AP63151 447 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 CDC42EP1Q00587 391 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 IFFO1Q0D2I5 559 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 PCBP1Q15365 356 aaKnown RBP eCLIP14.54□□□□□ -0.081e-11■■■□□ 14.6
RTN3-210ENST00000540798 TTC19Q6DKK2 380 aaPredicted RBP14.54□□□□□ -0.08
RTN3-210ENST00000540798 RELL1Q8IUW5 271 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 C2orf69Q8N8R5 385 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 JOSD2Q8TAC2 188 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 KAT2BQ92831 832 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 ADPGKQ9BRR6 497 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 TRAIPQ9BWF2 469 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 TSPYL1Q9H0U9 437 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 ASIC3Q9UHC3 531 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 NOVA2Q9UNW9 492 aaKnown RBP14.54□□□□□ -0.08
RTN3-210ENST00000540798 AGAP1Q9UPQ3 857 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 EFR3BQ9Y2G0 817 aa14.54□□□□□ -0.08
RTN3-210ENST00000540798 TJP3O95049 919 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 KRT3P12035 628 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 BYSLQ13895 437 aaKnown RBP14.53□□□□□ -0.08
RTN3-210ENST00000540798 ZBTB6Q15916 424 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 GPR162Q16538 588 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 RAPGEF5Q92565 580 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 SETD4Q9NVD3 440 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 DRG1Q9Y295 367 aaKnown RBP14.53□□□□□ -0.08
RTN3-210ENST00000540798 PI4K2BG5E9Z4 385 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 ATF2P15336 505 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 FGFR4P22455 802 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 CHKAP35790 457 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 ITGA8P53708 1063 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 ADAM17P78536 824 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 LMNB2Q03252 620 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 PTGISQ16647 500 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 TFDP3Q5H9I0 405 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 EPN3Q9H201 632 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 KLHL11Q9NVR0 708 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 KIAA1257Q9ULG3 409 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 SCN1AP35498 2009 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 NRCAMQ92823 1304 aa14.53□□□□□ -0.08
RTN3-210ENST00000540798 SMIM35A0A1B0GVV1 85 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 LRCH4O75427 683 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 CYP3A5P20815 502 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 SSR1P43307 286 aaKnown RBP14.52□□□□□ -0.08
RTN3-210ENST00000540798 PSMC1P62191 440 aaKnown RBP14.52□□□□□ -0.08
RTN3-210ENST00000540798 ORC1Q13415 861 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 ALKAL1Q6UXT8 129 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 CCDC89Q8N998 374 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 BBOF1Q8ND07 529 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 SNX27Q96L92 541 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 CDC42EP4Q9H3Q1 356 aaKnown RBP14.52□□□□□ -0.08
RTN3-210ENST00000540798 CENPHQ9H3R5 247 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 SLC5A4Q9NY91 659 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 TRPM7Q96QT4 1865 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 IGHA2P01877 340 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 SMIM10L2AP0DMW4 78 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 SMIM10L2BP0DMW5 78 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 KRT10P13645 584 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 GJC1P36383 396 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 MAGOHP61326 146 aaKnown RBP14.52□□□□□ -0.08
RTN3-210ENST00000540798 ACAP1Q15027 740 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 OASLQ15646 514 aaKnown RBP14.52□□□□□ -0.08
RTN3-210ENST00000540798 MFSD5Q6N075 450 aa14.52□□□□□ -0.08
RTN3-210ENST00000540798 LCLAT1Q6UWP7 414 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms