RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 PCSK1P29120 753 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PDE6CP51160 858 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CCDC142Q17RM4 750 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PRSS55Q6UWB4 352 aaPredicted RBP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 VPS52Q8N1B4 723 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 THEM5Q8N1Q8 247 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 C12orf29Q8N999 325 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 OLIG1Q8TAK6 271 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ZNF606Q8WXB4 792 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 TNIP3Q96KP6 325 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ZNF830Q96NB3 372 aaPredicted RBP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 TMEM209Q96SK2 561 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ACBD6Q9BR61 282 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PLVAPQ9BX97 442 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CDH9Q9ULB4 789 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 BZW2Q9Y6E2 419 aaKnown RBP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 C5orf67F2Z3F1 127 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 THAP12O43422 761 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 VDRP11473 427 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CHRNB2P17787 502 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PTPN1P18031 435 aaKnown RBP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 EIF4A3P38919 411 aaKnown RBP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CCZ1BP86790 482 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CCZ1P86791 482 aaPredicted RBP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CTXN3Q4LDR2 81 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 TAF3Q5VWG9 929 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CYP26C1Q6V0L0 522 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 B3GALNT2Q8NCR0 500 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 LNX1Q8TBB1 728 aaPredicted RBP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 RIN2Q8WYP3 895 aaPredicted RBP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 KCNF1Q9H3M0 494 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ALG13Q9NP73 1137 aaKnown RBP20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CRTAC1Q9NQ79 661 aa20.12■□□□□ 0.81
TNFRSF1A-213ENST00000540022 BRWD1Q9NSI6 2320 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SOWAHDA6NJG2 315 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 TBC1D4O60343 1298 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CFHP08603 1231 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 DSG1Q02413 1049 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 MAPK8IP2Q13387 824 aaPredicted RBP20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 INTS6LQ5JSJ4 861 aaKnown RBP20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ZNF280DQ6N043 979 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 KIAA1841Q6NSI8 718 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ANKS3Q6ZW76 656 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 TMTC1Q8IUR5 882 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PIK3R5Q8WYR1 880 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 AGPAT1Q99943 283 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 NHEJ1Q9H9Q4 299 aaPredicted RBP20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 FAM49BQ9NUQ9 324 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 KIAA1257Q9ULG3 409 aa20.11■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CUL9Q8IWT3 2517 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 MYO7AQ13402 2215 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SSU72P8A0A1W2PR75 194 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 MYBPHLA2RUH7 354 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 RB1P06400 928 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 MMEP08473 750 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 DNAJB1P25685 340 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SSTR3P32745 418 aaPredicted RBP20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 GLUD2P49448 558 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 FMO1Q01740 532 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CDR2Q01850 454 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ASTE1Q2TB18 679 aaPredicted RBP20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SGO2Q562F6 1265 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 RSPO2Q6UXX9 243 aaPredicted RBP20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 LRRTM3Q86VH5 581 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CCDC112Q8NEF3 446 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 FBXO22Q8NEZ5 403 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SPPL3Q8TCT6 385 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 GDPD5Q8WTR4 605 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 SAMD11Q96NU1 681 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PKMYT1Q99640 499 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 MTRRQ9UBK8 725 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 GTF3C4Q9UKN8 822 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 TSC2P49815 1807 aa20.1■□□□□ 0.81
TNFRSF1A-213ENST00000540022 XIRP2A4UGR9 3374 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 H7C4K7 107 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 O00370 1275 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 C2CD2LO14523 706 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 GRM6O15303 877 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 LPXNO60711 386 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CSPG5O95196 566 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 OR4Q2P0C623 313 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CCDC130P13994 396 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 POU3F3P20264 500 aaPredicted RBP20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CDR1P51861 262 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 MTF1Q14872 753 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PSMD5Q16401 504 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 MDH1BQ5I0G3 518 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PPP1R26Q5T8A7 1209 aaPredicted RBP20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 FAM171BQ6P995 826 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 RAD9BQ6WBX8 426 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ZNF677Q86XU0 584 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 GLYCTKQ8IVS8 523 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 PPM1EQ8WY54 764 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 CYFIP2Q96F07 1278 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 DNAI2Q9GZS0 605 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ZCWPW1Q9H0M4 648 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 ZBP1Q9H171 429 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 STK39Q9UEW8 545 aa20.09■□□□□ 0.81
TNFRSF1A-213ENST00000540022 LZTS1Q9Y250 596 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms