RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ITGAVP06756 1048 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 CFHP08603 1231 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 ZNF286BP0CG31 522 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 CYP2C8P10632 490 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 ARF4P18085 180 aaPredicted RBP6.99□□□□□ -1.29
USP28-206ENST00000538224 PCK1P35558 622 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 GJC1P36383 396 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 ADCYAP1R1P41586 468 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 KCNJ1P48048 391 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 CCT5P48643 541 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 ITGA8P53708 1063 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 RAD23BP54727 409 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 VCPP55072 806 aaKnown RBP6.99□□□□□ -1.29
USP28-206ENST00000538224 RPL7AP62424 266 aaKnown RBP6.99□□□□□ -1.29
USP28-206ENST00000538224 NR1H3Q13133 447 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 SNX1Q13596 522 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 ACVR2BQ13705 512 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 SLC29A2Q14542 456 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 STAT4Q14765 748 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 MORF4L2Q15014 288 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 PTPN20Q4JDL3 420 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 ZNF394Q53GI3 561 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 IZUMO3Q5VZ72 239 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 DENND1BQ6P3S1 775 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 NOTUMQ6P988 496 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 SLC27A1Q6PCB7 646 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 GPR142Q7Z601 462 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 NLRP14Q86W24 1093 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 CCDC25Q86WR0 208 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 VSIG1Q86XK7 387 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 CPNE8Q86YQ8 564 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 ZDHHC17Q8IUH5 632 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 ZCCHC9Q8N567 271 aaKnown RBP6.99□□□□□ -1.29
USP28-206ENST00000538224 LRRC52Q8N7C0 313 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 C2orf69Q8N8R5 385 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 CEP120Q8N960 986 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 SLC4A11Q8NBS3 891 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 BEST2Q8NFU1 509 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 P3H4Q92791 437 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 HPDLQ96IR7 371 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 MAML3Q96JK9 1138 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 MS4A4AQ96JQ5 239 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 CFAP57Q96MR6 1250 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 ZNF560Q96MR9 790 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 TINF2Q9BSI4 451 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 KATNAL1Q9BW62 490 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 NT5C1AQ9BXI3 368 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 NSRP1Q9H0G5 558 aaKnown RBP6.99□□□□□ -1.29
USP28-206ENST00000538224 EPB41L4BQ9H329 900 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 CDC42EP4Q9H3Q1 356 aaKnown RBP6.99□□□□□ -1.29
USP28-206ENST00000538224 MINDY3Q9H8M7 445 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 PCDH9Q9HC56 1237 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 GBA2Q9HCG7 927 aaPredicted RBP6.99□□□□□ -1.29
USP28-206ENST00000538224 ASNSD1Q9NWL6 643 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 DPP3Q9NY33 737 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 POLIQ9UNA4 740 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.99□□□□□ -1.29
USP28-206ENST00000538224 CLEC11AQ9Y240 323 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 NEU2Q9Y3R4 380 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 NRCAMQ92823 1304 aa6.99□□□□□ -1.29
USP28-206ENST00000538224 SMIM35A0A1B0GVV1 85 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 LRRD1A4D1F6 860 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 GMNCA6NCL1 334 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 ZNF487B1APH4 448 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 E7EVH7 732 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 M0QYV0 167 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 O00370 1275 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 TRAPPC3O43617 180 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 CAND2O75155 1236 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 CDH16O75309 829 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 ECM2O94769 699 aaPredicted RBP6.98□□□□□ -1.29
USP28-206ENST00000538224 MICAL2O94851 1124 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 TTC4O95801 387 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 F2P00734 622 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 VTNP04004 478 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 ERBB2P04626 1255 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 GJB1P08034 283 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 GPD1P21695 349 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 FGFR4P22455 802 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 IVDP26440 423 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 KLRC2P26717 231 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 SCNN1AP37088 669 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 PNPLA4P41247 253 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 CDKN2BP42772 138 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 MMP13P45452 471 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 CPT1AP50416 773 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 CORO7P57737 925 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 GUCY1A3Q02108 690 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 SLC25A11Q02978 314 aaKnown RBP6.98□□□□□ -1.29
USP28-206ENST00000538224 ZNF252P-AS1Q0IIN9 211 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 TFDP2Q14188 446 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 TAZQ16635 292 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 SLC10A6Q3KNW5 377 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 C2CD6Q53TS8 623 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 FAM47CQ5HY64 1035 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 LLGL2Q6P1M3 1020 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 LCLAT1Q6UWP7 414 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 MFSD7Q6UXD7 560 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 CATSPER4Q7RTX7 472 aa6.98□□□□□ -1.29
USP28-206ENST00000538224 YTHDF3Q7Z739 585 aaKnown RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms