RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 CAMK2BQ13554 666 aa11.4□□□□□ -0.58
CLSTN3-207ENST00000537408 NIPAL1Q6NVV3 410 aa11.4□□□□□ -0.58
CLSTN3-207ENST00000537408 BORAQ6PGQ7 559 aa11.4□□□□□ -0.58
CLSTN3-207ENST00000537408 GDPD5Q8WTR4 605 aa11.4□□□□□ -0.58
CLSTN3-207ENST00000537408 EFHD2Q96C19 240 aaPredicted RBP11.4□□□□□ -0.58
CLSTN3-207ENST00000537408 PHF12Q96QT6 1004 aa11.4□□□□□ -0.58
CLSTN3-207ENST00000537408 C10orf88Q9H8K7 445 aa11.4□□□□□ -0.58
CLSTN3-207ENST00000537408 EMILIN3Q9NT22 766 aa11.4□□□□□ -0.58
CLSTN3-207ENST00000537408 NOD1Q9Y239 953 aa11.4□□□□□ -0.58
CLSTN3-207ENST00000537408 USP17L15C9J2P7 530 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 USP17L13C9JLJ4 530 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 USP17L11C9JVI0 530 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 USP17L18D6R9N7 530 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 USP17L22D6RA61 530 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 USP17L17D6RBQ6 530 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 USP17L19D6RCP7 530 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 USP17L20D6RJB6 530 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 AP1G1O43747 822 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 CA4P22748 312 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 USP17L24Q0WX57 530 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 TRIP10Q15642 601 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 CTC1Q2NKJ3 1217 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 MFSD14CQ5VZR4 134 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 TRMT1LQ7Z2T5 733 aaKnown RBP11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 TTC39CQ8N584 583 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 ZFP28Q8NHY6 868 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 HES6Q96HZ4 224 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 QPCTLQ9NXS2 382 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 ASIC3Q9UHC3 531 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 LGALS13Q9UHV8 139 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 CCPG1Q9ULG6 757 aa11.4□□□□□ -0.59
CLSTN3-207ENST00000537408 SERPINB6P35237 376 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 MSLNQ13421 630 aaPredicted RBP11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 CCDC137Q6PK04 289 aaKnown RBP11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 NSMFQ6X4W1 530 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 CAPN12Q6ZSI9 719 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 RAPH1Q70E73 1250 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 ART4Q93070 314 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 DYNLL2Q96FJ2 89 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 CNGB3Q9NQW8 809 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 ZSWIM5Q9P217 1185 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 MYH2Q9UKX2 1941 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 ARHGAP42A6NI28 874 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 CASQ2O14958 399 aaPredicted RBP11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 DGKZQ13574 1117 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 LRRC47Q8N1G4 583 aaKnown RBP11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 TRPC4APQ8TEL6 797 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 PTCD3Q96EY7 689 aaKnown RBP11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 PALMDQ9NP74 551 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 SLCO1B3Q9NPD5 702 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 PFDN6O15212 129 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 USP1O94782 785 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 MUTP22033 750 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 MXI1P50539 228 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 C21orf59P57076 290 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 FOLH1Q04609 750 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 STK4Q13043 487 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 MPP2Q14168 576 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 LPCAT2Q7L5N7 544 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 SIX5Q8N196 739 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 ZNF512BQ96KM6 892 aaPredicted RBP11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 HGH1Q9BTY7 390 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 OLFML3Q9NRN5 406 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 NAALADL1Q9UQQ1 740 aa11.39□□□□□ -0.59
CLSTN3-207ENST00000537408 TLR2O60603 784 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 TTC4O95801 387 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 NT5C2P49902 561 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 HMGCS2P54868 508 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 ACTR3P61158 418 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 CAV1Q03135 178 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 PPATQ06203 517 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 NR1D2Q14995 579 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 KCTD19Q17RG1 926 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 FAM172AQ8WUF8 416 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 KBTBD4Q9NVX7 518 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 TAS2R1Q9NYW7 299 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 RABGEF1Q9UJ41 708 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 DTNAQ9Y4J8 743 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 COL4A3BPQ9Y5P4 624 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 FAM47E-STBD1D6RA91 191 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 H3BRJ5 948 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 PIK3CDO00329 1044 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 HSPA1AP0DMV8 641 aaKnown RBP11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 HSPA1BP0DMV9 641 aaKnown RBP11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 ZBTB48P10074 688 aaPredicted RBP11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 FGFR2P21802 821 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 NCKAP1LP55160 1127 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 MYLK3Q32MK0 819 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 ARL13BQ3SXY8 428 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 NACC2Q96BF6 587 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 C18orf8Q96DM3 657 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 THTPAQ9BU02 230 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 RIC8AQ9NPQ8 531 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 PTPN22Q9Y2R2 807 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 TBCAO75347 108 aaKnown RBP11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 PMLP29590 882 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 SLFN13Q68D06 897 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 SNRNP48Q6IEG0 339 aaKnown RBP11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 SLFN11Q7Z7L1 901 aa11.38□□□□□ -0.59
CLSTN3-207ENST00000537408 CALML6Q8TD86 181 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms