RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CTHP32929 405 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 LHX1P48742 406 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 NASPP49321 788 aaPredicted RBP15.83■□□□□ 0.12
VPS28-215ENST00000531924 ASIC1P78348 528 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 ITPRIPL2Q3MIP1 535 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 DGLUCYQ7Z3D6 616 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 SPATA2LQ8IUW3 424 aaPredicted RBP15.83■□□□□ 0.12
VPS28-215ENST00000531924 ADGRF2Q8IZF7 708 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 CMTM8Q8IZV2 173 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 SPEM1Q8N4L4 309 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 MAB21L3Q8N8X9 362 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 IQUBQ8NA54 791 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 ZSWIM2Q8NEG5 633 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 NELL1Q92832 810 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 DHX58Q96C10 678 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 RMDN1Q96DB5 314 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 SLC46A2Q9BY10 475 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 MTMR12Q9C0I1 747 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 CUEDC2Q9H467 287 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 IL21Q9HBE4 155 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 ABCB6Q9NP58 842 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 TFIP11Q9UBB9 837 aaKnown RBP15.83■□□□□ 0.12
VPS28-215ENST00000531924 UXTQ9UBK9 157 aaPredicted RBP15.83■□□□□ 0.12
VPS28-215ENST00000531924 L1RE1Q9UN81 338 aa15.83■□□□□ 0.12
VPS28-215ENST00000531924 LILRB5O75023 590 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 PPP6R2O75170 966 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 WNT7BP56706 349 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 NLRP12P59046 1061 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 AMPD2Q01433 879 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 SATB1Q01826 763 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 PUM1Q14671 1186 aaKnown RBP eCLIP15.82■□□□□ 0.12
VPS28-215ENST00000531924 DUOXA2Q1HG44 320 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 INTS6LQ5JSJ4 861 aaKnown RBP15.82■□□□□ 0.12
VPS28-215ENST00000531924 PRR23BQ6ZRT6 265 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 TOP6BLQ8N6T0 577 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 LINC00301Q8NCQ3 95 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 TTC16Q8NEE8 873 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 LRRC3BQ96PB8 259 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 FGFBP2Q9BYJ0 223 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 BACH2Q9BYV9 841 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 KIAA1586Q9HCI6 787 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 GKN1Q9NS71 199 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 RBM12Q9NTZ6 932 aaKnown RBP15.82■□□□□ 0.12
VPS28-215ENST00000531924 TMLHEQ9NVH6 421 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 GDAP2Q9NXN4 497 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 GTF3C4Q9UKN8 822 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 USP18Q9UMW8 372 aa15.82■□□□□ 0.12
VPS28-215ENST00000531924 SDHBP21912 280 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 CYP2F1P24903 491 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 GPR15P49685 360 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 TNK2Q07912 1038 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 PON2Q15165 354 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 DDR2Q16832 855 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 SDHAF4Q5VUM1 108 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 FOXD4L5Q5VV16 416 aaPredicted RBP15.81■□□□□ 0.12
VPS28-215ENST00000531924 LMBRD2Q68DH5 695 aaPredicted RBP15.81■□□□□ 0.12
VPS28-215ENST00000531924 SCN4BQ8IWT1 228 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 SPATA18Q8TC71 538 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 LEO1Q8WVC0 666 aaPredicted RBP15.81■□□□□ 0.12
VPS28-215ENST00000531924 FOXD4L4Q8WXT5 416 aaPredicted RBP15.81■□□□□ 0.12
VPS28-215ENST00000531924 HPS3Q969F9 1004 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 HPDLQ96IR7 371 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 KIF9Q9HAQ2 790 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 TRPC7Q9HCX4 862 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 TDP1Q9NUW8 608 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 INTS13Q9NVM9 706 aa15.81■□□□□ 0.12
VPS28-215ENST00000531924 SOBPA7XYQ1 873 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 CUTAO60888 179 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 YEATS4O95619 227 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 F11P03951 625 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 HMGA1P17096 107 aaKnown RBP15.8■□□□□ 0.12
VPS28-215ENST00000531924 GRSF1Q12849 480 aaKnown RBP eCLIP15.8■□□□□ 0.12
VPS28-215ENST00000531924 LPAL2Q16609 132 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 FOXD4L6Q3SYB3 417 aaPredicted RBP15.8■□□□□ 0.12
VPS28-215ENST00000531924 TXNDC8Q6A555 127 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 HEATR6Q6AI08 1181 aaKnown RBP15.8■□□□□ 0.12
VPS28-215ENST00000531924 TXNDC11Q6PKC3 985 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 FOXD4L3Q6VB84 417 aaPredicted RBP15.8■□□□□ 0.12
VPS28-215ENST00000531924 C4orf50Q6ZRC1 276 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 MON1AQ86VX9 555 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 CBWD2Q8IUF1 395 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 SYNPOQ8N3V7 929 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 FSIP1Q8NA03 581 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 EXOC4Q96A65 974 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 FAM84AQ96KN4 292 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 FNBP1Q96RU3 617 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 MMS19Q96T76 1030 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 TRIM9Q9C026 710 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 KBTBD4Q9NVX7 518 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 FAM13BQ9NYF5 915 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 HSPBP1Q9NZL4 362 aa15.8■□□□□ 0.12
VPS28-215ENST00000531924 F5P12259 2224 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 TICRRQ7Z2Z1 1910 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 TRAV19A0A0A6YYK7 116 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 EIF3DO15371 548 aaKnown RBP eCLIP15.79■□□□□ 0.12
VPS28-215ENST00000531924 CLSTN1O94985 981 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 CKMP06732 381 aa15.79■□□□□ 0.12
VPS28-215ENST00000531924 DLATP10515 647 aaKnown RBP15.79■□□□□ 0.12
VPS28-215ENST00000531924 PDIA4P13667 645 aaKnown RBP15.79■□□□□ 0.12
VPS28-215ENST00000531924 TNNI1P19237 187 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms