RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 FGFBP2Q9BYJ0 223 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 SMG9Q9H0W8 520 aaKnown RBP12.22□□□□□ -0.45
VPS28-214ENST00000531032 ABCB6Q9NP58 842 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 THG1LQ9NWX6 298 aaKnown RBP12.22□□□□□ -0.45
VPS28-214ENST00000531032 RBAKQ9NYW8 714 aaPredicted RBP12.22□□□□□ -0.45
VPS28-214ENST00000531032 ITGA11Q9UKX5 1188 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 USP18Q9UMW8 372 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 L1RE1Q9UN81 338 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 PCDHB5Q9Y5E4 795 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 PCDHB13Q9Y5F0 798 aa12.22□□□□□ -0.45
VPS28-214ENST00000531032 A0A087X0B3 334 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 CHURC1-FNTBB4DL54 471 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 HRO43593 1189 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 EXTL3O43909 919 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 LRP3O75074 770 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 RETP07949 1114 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 CSH1P0DML2 217 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 CSH2P0DML3 217 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 IDEP14735 1019 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 AVPR1AP37288 418 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 STAT6P42226 847 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 FNTBP49356 437 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 GPR15P49685 360 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 LPAL2Q16609 132 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 LONP2Q86WA8 852 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 TMEM86AQ8N2M4 240 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 MAB21L3Q8N8X9 362 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 SPATA18Q8TC71 538 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 CACTINQ8WUQ7 758 aaKnown RBP12.21□□□□□ -0.45
VPS28-214ENST00000531032 USP13Q92995 863 aaPredicted RBP12.21□□□□□ -0.45
VPS28-214ENST00000531032 CBWD1Q9BRT8 395 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 PI4K2AQ9BTU6 479 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 KIF9Q9HAQ2 790 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 HPS4Q9NQG7 708 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 C2orf42Q9NWW7 574 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 GDAP2Q9NXN4 497 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 DDX43Q9NXZ2 648 aaKnown RBP12.21□□□□□ -0.45
VPS28-214ENST00000531032 CDV3Q9UKY7 258 aaKnown RBP12.21□□□□□ -0.45
VPS28-214ENST00000531032 AGAP1Q9UPQ3 857 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 CCL26Q9Y258 94 aa12.21□□□□□ -0.45
VPS28-214ENST00000531032 ZNF638Q14966 1978 aaKnown RBP12.2□□□□□ -0.46
VPS28-214ENST00000531032 HUS1O60921 280 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 PRPF40AO75400 957 aaKnown RBP12.2□□□□□ -0.46
VPS28-214ENST00000531032 TADA3O75528 432 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 ATXN1P54253 815 aaKnown RBP12.2□□□□□ -0.46
VPS28-214ENST00000531032 MYL7Q01449 175 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 CEBPZQ03701 1054 aaKnown RBP12.2□□□□□ -0.46
VPS28-214ENST00000531032 SPEM2Q0P670 501 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 BFSP1Q12934 665 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 SIM2Q14190 667 aaPredicted RBP12.2□□□□□ -0.46
VPS28-214ENST00000531032 ZNF268Q14587 947 aaPredicted RBP12.2□□□□□ -0.46
VPS28-214ENST00000531032 SLC39A14Q15043 492 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 CFAP221Q4G0U5 840 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 INTS6LQ5JSJ4 861 aaKnown RBP12.2□□□□□ -0.46
VPS28-214ENST00000531032 TXNDC8Q6A555 127 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 SCARA3Q6AZY7 606 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 PRR23BQ6ZRT6 265 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 MON1AQ86VX9 555 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 SYCP3Q8IZU3 236 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 CSGALNACT2Q8N6G5 542 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 TOP6BLQ8N6T0 577 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 STKLD1Q8NE28 680 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 RIN3Q8TB24 985 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 CHFRQ96EP1 664 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 TRMT2BQ96GJ1 504 aaKnown RBP12.2□□□□□ -0.46
VPS28-214ENST00000531032 MYRFLQ96LU7 910 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 USP28Q96RU2 1077 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 MTMR12Q9C0I1 747 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 TMEM206Q9H813 350 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 GKN1Q9NS71 199 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 TDP1Q9NUW8 608 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 PANK4Q9NVE7 773 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 SIX4Q9UIU6 781 aa12.2□□□□□ -0.46
VPS28-214ENST00000531032 GOLGA8IPA6NC78 632 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 OTOL1A6NHN0 477 aaPredicted RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 GOLGA8JA6NMD2 632 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 TRDMT1O14717 391 aaKnown RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 GABRDO14764 452 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 KIAA0391O15091 583 aaKnown RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 NOL4O94818 638 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 ACAT1P24752 427 aaKnown RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 CYP2F1P24903 491 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 LHX1P48742 406 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 NASPP49321 788 aaPredicted RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 RPL10AP62906 217 aaKnown RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 RBP5P82980 135 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 SRSF5Q13243 272 aaKnown RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 RUNX3Q13761 415 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 DDR2Q16832 855 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 TMEM196Q5HYL7 178 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 SDHAF4Q5VUM1 108 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 HEATR6Q6AI08 1181 aaKnown RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 WDR5BQ86VZ2 330 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 OSTM1Q86WC4 334 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 ADGRF2Q8IZF7 708 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 GPD1LQ8N335 351 aa12.19□□□□□ -0.46
VPS28-214ENST00000531032 MRPS31Q92665 395 aaKnown RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 INTS4Q96HW7 963 aaKnown RBP12.19□□□□□ -0.46
VPS28-214ENST00000531032 FUBP3Q96I24 572 aaKnown RBP eCLIP12.19□□□□□ -0.46
VPS28-214ENST00000531032 FAM84AQ96KN4 292 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms