RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TTYH3Q9C0H2 523 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 XPR1Q9UBH6 696 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 ZNHIT2Q9UHR6 403 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 TMX2Q9Y320 296 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 POLR2AP24928 1970 aaKnown RBP5.87□□□□□ -1.47
CD44-223ENST00000526553 A6NNZ2 444 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 ORC4O43929 436 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 HRGP04196 525 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 CYP2C9P11712 490 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 BMP5P22003 454 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 PPIFP30405 207 aaKnown RBP5.86□□□□□ -1.47
CD44-223ENST00000526553 PLA2G5P39877 138 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 SLC11A2P49281 568 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 CLK3P49761 638 aaKnown RBP5.86□□□□□ -1.47
CD44-223ENST00000526553 ZNF134P52741 427 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 MAPK10P53779 464 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 WNT3P56703 355 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 CNN3Q15417 329 aaKnown RBP5.86□□□□□ -1.47
CD44-223ENST00000526553 TXNRD1Q16881 649 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 LAYNQ6UX15 382 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 TMEM108Q6UXF1 575 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 ZNF783Q6ZMS7 281 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 TSHZ1Q6ZSZ6 1077 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 CHST15Q7LFX5 561 aaPredicted RBP5.86□□□□□ -1.47
CD44-223ENST00000526553 COL23A1Q86Y22 540 aaPredicted RBP5.86□□□□□ -1.47
CD44-223ENST00000526553 OR6B3Q8NGW1 331 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 TTC8Q8TAM2 541 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 ANKS1AQ92625 1134 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 ALG8Q9BVK2 526 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 ACTRT3Q9BYD9 372 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 TPSD1Q9BZJ3 242 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 KLC4Q9NSK0 619 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.86□□□□□ -1.47
CD44-223ENST00000526553 DDX20Q9UHI6 824 aaKnown RBP5.86□□□□□ -1.47
CD44-223ENST00000526553 INSL6Q9Y581 213 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 PAXBP1Q9Y5B6 917 aa5.86□□□□□ -1.47
CD44-223ENST00000526553 ADGRA2Q96PE1 1338 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 A0A087WWL8 130 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 MYO1FO00160 1098 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 KIAA0355O15063 1070 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 ZBED1O96006 694 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 KITP10721 976 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 XRCC6P12956 609 aaKnown RBP eCLIP5.85□□□□□ -1.47
CD44-223ENST00000526553 CACNB3P54284 484 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 UCP3P55916 312 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 VPS53Q5VIR6 699 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 KAZNQ674X7 775 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 LMBRD2Q68DH5 695 aaPredicted RBP5.85□□□□□ -1.47
CD44-223ENST00000526553 PEG10Q86TG7 708 aaKnown RBP5.85□□□□□ -1.47
CD44-223ENST00000526553 PRIMA1Q86XR5 153 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 FMNL3Q8IVF7 1028 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 TFAP2BQ92481 460 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 SUCLG2Q96I99 432 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 PBKQ96KB5 322 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 DUSP26Q9BV47 211 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 PRDM11Q9NQV5 511 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 OBP2AQ9NY56 170 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 TLK1Q9UKI8 766 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 SHOC2Q9UQ13 582 aa5.85□□□□□ -1.47
CD44-223ENST00000526553 ADM5C9JUS6 153 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 MYO1CO00159 1063 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 BTN3A1O00481 513 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 MGST3O14880 152 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 NUDT3O95989 172 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 CHRM2P08172 466 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 ATF3P18847 181 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 SLC7A1P30825 629 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 GRIA3P42263 894 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 PXNP49023 591 aaPredicted RBP5.84□□□□□ -1.47
CD44-223ENST00000526553 CACNA2D1P54289 1103 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 LILRA4P59901 499 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 GRM3Q14832 879 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 TEDDM1Q5T9Z0 273 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 STRIP1Q5VSL9 837 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 ICE2Q659A1 982 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 APOA5Q6Q788 366 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 C14orf80Q86SX3 495 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 PTDSS2Q9BVG9 487 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 RIOX1Q9H6W3 641 aa5.84□□□□□ -1.47
CD44-223ENST00000526553 CFAP69A5D8W1 941 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 ISM1B1AKI9 464 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 TPP1O14773 563 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 TBX3O15119 743 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 RHOP08100 348 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 LRPAP1P30533 357 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 SATB1Q01826 763 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 SLC13A2Q13183 592 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 RAB32Q13637 225 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 LLGL1Q15334 1064 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 GRASPQ7Z6J2 395 aaPredicted RBP5.83□□□□□ -1.48
CD44-223ENST00000526553 GAS2L3Q86XJ1 694 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 WDR75Q8IWA0 830 aaKnown RBP5.83□□□□□ -1.48
CD44-223ENST00000526553 DNAJC5GQ8N7S2 189 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 LRTOMTQ8WZ04 291 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 FKBP10Q96AY3 582 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 MESP1Q9BRJ9 268 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 PRDM13Q9H4Q3 707 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 SMURF2Q9HAU4 748 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 EHD3Q9NZN3 535 aa5.83□□□□□ -1.48
CD44-223ENST00000526553 SLC17A6Q9P2U8 582 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms