RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MTFMTQ96DP5 389 aaKnown RBP5.1□□□□□ -1.59
CD44-217ENST00000525348 SPATA5L1Q9BVQ7 753 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 SARS2Q9NP81 518 aaKnown RBP5.1□□□□□ -1.59
CD44-217ENST00000525348 SLC17A6Q9P2U8 582 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 MED16Q9Y2X0 877 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.1□□□□□ -1.59
CD44-217ENST00000525348 ENTPD2Q9Y5L3 495 aa5.1□□□□□ -1.59
CD44-217ENST00000525348 A6NNZ2 444 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 PPM1DO15297 605 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 SOAT2O75908 522 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 S100BP04271 92 aaPredicted RBP5.09□□□□□ -1.59
CD44-217ENST00000525348 ERBB2P04626 1255 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 GRPP07492 148 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 KCNJ5P48544 419 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 ARFIP2P53365 341 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 LILRA4P59901 499 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 LONRF3Q496Y0 759 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 FAM102BQ5T8I3 360 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 NPNTQ6UXI9 565 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 DAAM2Q86T65 1068 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 JDP2Q8WYK2 163 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 FKBP10Q96AY3 582 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 FAM136AQ96C01 138 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 PBKQ96KB5 322 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 UROC1Q96N76 676 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 B3GNT5Q9BYG0 378 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 KRTAP17-1Q9BYP8 105 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 PTGFRNQ9P2B2 879 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 ADAM21Q9UKJ8 722 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 ST3GAL5Q9UNP4 418 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 SSX2IPQ9Y2D8 614 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 PLEKHM1Q9Y4G2 1056 aa5.09□□□□□ -1.59
CD44-217ENST00000525348 NR2F6P10588 404 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 UCP3P55916 312 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 PROK1P58294 105 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 EIF2B5Q13144 721 aaKnown RBP5.08□□□□□ -1.6
CD44-217ENST00000525348 PPP2R5AQ15172 486 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 TBCCQ15814 346 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 TSTD2Q5T7W7 516 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 CXorf57Q6NSI4 855 aaKnown RBP5.08□□□□□ -1.6
CD44-217ENST00000525348 CHPFQ8IZ52 775 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 TIMP4Q99727 224 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 TRIM54Q9BYV2 358 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 XPR1Q9UBH6 696 aa5.08□□□□□ -1.6
CD44-217ENST00000525348 ARPP21Q9UBL0 812 aaPredicted RBP5.08□□□□□ -1.6
CD44-217ENST00000525348 CCDC151A5D8V7 595 aa5.07□□□□□ -1.6
CD44-217ENST00000525348 CTNND1O60716 968 aaKnown RBP5.07□□□□□ -1.6
CD44-217ENST00000525348 KITP10721 976 aa5.07□□□□□ -1.6
CD44-217ENST00000525348 JUPP14923 745 aa5.07□□□□□ -1.6
CD44-217ENST00000525348 SLC11A2P49281 568 aa5.07□□□□□ -1.6
CD44-217ENST00000525348 ELLP55199 621 aaPredicted RBP5.07□□□□□ -1.6
CD44-217ENST00000525348 ANO6Q4KMQ2 910 aa5.07□□□□□ -1.6
CD44-217ENST00000525348 COLEC12Q5KU26 742 aa5.07□□□□□ -1.6
CD44-217ENST00000525348 MAVSQ7Z434 540 aa5.07□□□□□ -1.6
CD44-217ENST00000525348 MAGEB6Q8N7X4 407 aa5.07□□□□□ -1.6
CD44-217ENST00000525348 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.07□□□□□ -1.6
CD44-217ENST00000525348 DDX20Q9UHI6 824 aaKnown RBP5.07□□□□□ -1.6
CD44-217ENST00000525348 SERTAD3Q9UJW9 196 aa5.07□□□□□ -1.6
CD44-217ENST00000525348 G3BP2Q9UN86 482 aaKnown RBP5.07□□□□□ -1.6
CD44-217ENST00000525348 A0A087WWL8 130 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 MASP2O00187 686 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 URI1O94763 535 aaPredicted RBP5.06□□□□□ -1.6
CD44-217ENST00000525348 ATXN1LP0C7T5 689 aaKnown RBP5.06□□□□□ -1.6
CD44-217ENST00000525348 ZFXP17010 805 aaPredicted RBP5.06□□□□□ -1.6
CD44-217ENST00000525348 ZNF37AP17032 561 aaPredicted RBP5.06□□□□□ -1.6
CD44-217ENST00000525348 VIPR2P41587 438 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 LOXL3P58215 753 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 C21orf58P58505 322 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 IQCB1Q15051 598 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 CCDC142Q17RM4 750 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 ZIK1Q3SY52 487 aaPredicted RBP5.06□□□□□ -1.6
CD44-217ENST00000525348 AKNAD1Q5T1N1 836 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 NXNQ6DKJ4 435 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 GRASPQ7Z6J2 395 aaPredicted RBP5.06□□□□□ -1.6
CD44-217ENST00000525348 AMIGO2Q86SJ2 522 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 ZNF280BQ86YH2 543 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 RASAL3Q86YV0 1011 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 TCEAL8Q8IYN2 117 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 KIAA0319LQ8IZA0 1049 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 ZNF384Q8TF68 577 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 MAML1Q92585 1016 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 SARAFQ96BY9 339 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 ALG8Q9BVK2 526 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 DPH1Q9BZG8 443 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 TMEM60Q9H2L4 133 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 SMURF2Q9HAU4 748 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 CPNE5Q9HCH3 593 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 CNNM1Q9NRU3 951 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 PIH1D1Q9NWS0 290 aaKnown RBP5.06□□□□□ -1.6
CD44-217ENST00000525348 EHD3Q9NZN3 535 aa5.06□□□□□ -1.6
CD44-217ENST00000525348 USP19O94966 1318 aa5.05□□□□□ -1.6
CD44-217ENST00000525348 A0A1W2PPL8 197 aa5.05□□□□□ -1.6
CD44-217ENST00000525348 TMEM233B4DJY2 109 aa5.05□□□□□ -1.6
CD44-217ENST00000525348 hCG_1984214I3L0E3 225 aa5.05□□□□□ -1.6
CD44-217ENST00000525348 TSPAN6O43657 245 aa5.05□□□□□ -1.6
CD44-217ENST00000525348 RBMXL2O75526 392 aaKnown RBP5.05□□□□□ -1.6
CD44-217ENST00000525348 WT1P19544 449 aaPredicted RBP5.05□□□□□ -1.6
CD44-217ENST00000525348 LIPAP38571 399 aa5.05□□□□□ -1.6
CD44-217ENST00000525348 PXNP49023 591 aaPredicted RBP5.05□□□□□ -1.6
CD44-217ENST00000525348 CLCN2P51788 898 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms