RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 Q9UFV3 132 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 HELZ2Q9BYK8 2649 aaKnown RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 ANKRD17O75179 2603 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 MATN2O00339 956 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 ARHGAP6O43182 974 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 CTIFO43310 598 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 OPA1O60313 960 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 ZNF202O95125 648 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 HIBADHP31937 336 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 GYG1P46976 350 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 RBM5P52756 815 aaKnown RBP eCLIP6.15□□□□□ -1.42
NUP54-218ENST00000515460 NAP1L1P55209 391 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 PSMC1P62191 440 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 UBE4AQ14139 1066 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 EIF4HQ15056 248 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 CCDC57Q2TAC2 916 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 LSM12Q3MHD2 195 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 FILIP1LQ4L180 1135 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 DNAJC21Q5F1R6 531 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 CCDC181Q5TID7 509 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 ZKSCAN2Q63HK3 967 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 GRAMD4Q6IC98 578 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 CC2D1AQ6P1N0 951 aaPredicted RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 ABHD17CQ6PCB6 329 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 POLNQ7Z5Q5 900 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 C1orf210Q8IVY1 113 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 WDR63Q8IWG1 891 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 ANKRD13AQ8IZ07 590 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 CHST14Q8NCH0 376 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 BRI3BPQ8WY22 251 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 OPTNQ96CV9 577 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 SH3GL3Q99963 347 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 AMNQ9BXJ7 453 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 SLKQ9H2G2 1235 aaPredicted RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 SAMD15Q9P1V8 674 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 SUN2Q9UH99 717 aa6.15□□□□□ -1.42
NUP54-218ENST00000515460 PUF60Q9UHX1 559 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 DDX60LQ5H9U9 1706 aaKnown RBP6.15□□□□□ -1.42
NUP54-218ENST00000515460 COL1A1P02452 1464 aaPredicted RBP6.15□□□□□ -1.43
NUP54-218ENST00000515460 EP300Q09472 2414 aaPredicted RBP6.14□□□□□ -1.43
NUP54-218ENST00000515460 TCP10L2B9ZVM9 353 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 M0R2C6 588 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 MYO1CO00159 1063 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 GRM8O00222 908 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 KINO60870 393 aaKnown RBP6.14□□□□□ -1.43
NUP54-218ENST00000515460 TPM1P09493 284 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 FAM200BP0CF97 657 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 U2AF2P26368 475 aaKnown RBP eCLIP6.14□□□□□ -1.435e-7■□□□□ 8.9
NUP54-218ENST00000515460 APEX1P27695 318 aaKnown RBP6.14□□□□□ -1.43
NUP54-218ENST00000515460 MAGEA9P43362 315 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 PSMC4P43686 418 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 FNTBP49356 437 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 HNRNPH2P55795 449 aaKnown RBP6.14□□□□□ -1.43
NUP54-218ENST00000515460 CD83Q01151 205 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 PRKCZQ05513 592 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 ABHD18Q0P651 414 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 TMED1Q13445 227 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 MOGSQ13724 837 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 NFYCQ13952 458 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 TM4SF20Q53R12 229 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 MFSD14BQ5SR56 506 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 TEX35Q5T0J7 233 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 KANK2Q63ZY3 851 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 TMEM200BQ69YZ2 307 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 FSTL4Q6MZW2 842 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 LRSAM1Q6UWE0 723 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 UBE2R2Q712K3 238 aaPredicted RBP6.14□□□□□ -1.43
NUP54-218ENST00000515460 FILIP1Q7Z7B0 1213 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 SYNPOQ8N3V7 929 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 ZNF808Q8N4W9 903 aaPredicted RBP6.14□□□□□ -1.43
NUP54-218ENST00000515460 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.14□□□□□ -1.43
NUP54-218ENST00000515460 ATOH1Q92858 354 aaPredicted RBP6.14□□□□□ -1.43
NUP54-218ENST00000515460 SUCLG2Q96I99 432 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 LZTS2Q9BRK4 669 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 TMEM39BQ9GZU3 492 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 PCIF1Q9H4Z3 704 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 CNNM1Q9NRU3 951 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 UTP6Q9NYH9 597 aaKnown RBP6.14□□□□□ -1.43
NUP54-218ENST00000515460 CTNNA3Q9UI47 895 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 FAM184BQ9ULE4 1060 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 SLC30A1Q9Y6M5 507 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 MYPNQ86TC9 1320 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 SMG1Q96Q15 3661 aaKnown RBP6.14□□□□□ -1.43
NUP54-218ENST00000515460 CEP250Q9BV73 2442 aa6.14□□□□□ -1.43
NUP54-218ENST00000515460 PRR23AA6NEV1 266 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 TMCO5BA8MYB1 307 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 PES1O00541 588 aaKnown RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 ERC2O15083 957 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 MAFO75444 373 aaPredicted RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 BAG4O95429 457 aaKnown RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 NBPF7P0C2Y1 421 aaPredicted RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 MSX2P35548 267 aaPredicted RBP6.13□□□□□ -1.43
NUP54-218ENST00000515460 PRMT2P55345 433 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 PTH1RQ03431 593 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 GPS2Q13227 327 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 SQSTM1Q13501 440 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 VGLL4Q14135 290 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 PCOLCEQ15113 449 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 LONRF3Q496Y0 759 aa6.13□□□□□ -1.43
NUP54-218ENST00000515460 LRRC24Q50LG9 513 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms