RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SLC12A6Q9UHW9 1150 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 SHOC2Q9UQ13 582 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 FSCN2O14926 492 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 ZSCAN5DPP0CG00 497 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 TM4SF1P30408 202 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 AP1B1Q10567 949 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 BIRC2Q13490 618 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 WASHC2DQ5SRD0 308 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 MROH9Q5TGP6 573 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 DAB2IPQ5VWQ8 1189 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 AGR3Q8TD06 166 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 PIK3R5Q8WYR1 880 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 EFHD1Q9BUP0 239 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 TMEM120AQ9BXJ8 343 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 TEX13BQ9BXU2 312 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 UNC5CO95185 931 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 ZFXP17010 805 aaPredicted RBP8.8□□□□□ -1
LIMCH1-216ENST00000512820 CDC25CP30307 473 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 SSTR1P30872 391 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 HOXA10P31260 410 aaPredicted RBP8.8□□□□□ -1
LIMCH1-216ENST00000512820 SERPINB9P50453 376 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 STX1BP61266 288 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 NCALDP61601 193 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 MED21Q13503 144 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 FAXCQ5TGI0 409 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 ACAD11Q709F0 780 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 TCP10LQ8TDR4 215 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 TEKT4Q8WW24 435 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 ZNF75CPQ92670 426 aaPredicted RBP8.8□□□□□ -1
LIMCH1-216ENST00000512820 ATXN7L3BQ96GX2 97 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 FAM198AQ9UFP1 575 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 TRIM33Q9UPN9 1127 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.8□□□□□ -1
LIMCH1-216ENST00000512820 ARFGEF2Q9Y6D5 1785 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 TCRBV7S2A1N4TA0A589 114 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 TM9SF1O15321 606 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 CREB3O43889 395 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 BGNP21810 368 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 SEPT6Q14141 434 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 MAP4K3Q8IVH8 894 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 DCLK2Q8N568 766 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 MCUQ8NE86 351 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 ANKRD27Q96NW4 1050 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 SIX2Q9NPC8 291 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.8□□□□□ -1
LIMCH1-216ENST00000512820 AGAP1Q9UPQ3 857 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 USP20Q9Y2K6 914 aa8.8□□□□□ -1
LIMCH1-216ENST00000512820 CALB2P22676 271 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 SERPINB4P48594 390 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 RNF43Q68DV7 783 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 NAIF1Q69YI7 327 aaPredicted RBP8.79□□□□□ -1
LIMCH1-216ENST00000512820 TTC27Q6P3X3 843 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 PRUNE1Q86TP1 453 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 SULF1Q8IWU6 871 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 TRIML2Q8N7C3 387 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 STK32AQ8WU08 396 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 ZNF606Q8WXB4 792 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 HDAC11Q96DB2 347 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 VCPIP1Q96JH7 1222 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 CGRRF1Q99675 332 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 PDCD2LQ9BRP1 358 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 FRMD8P1Q9BZ68 369 aaPredicted RBP8.79□□□□□ -1
LIMCH1-216ENST00000512820 MTMR12Q9C0I1 747 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 BFARQ9NZS9 450 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 MCM8Q9UJA3 840 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 AJAP1Q9UKB5 411 aaPredicted RBP8.79□□□□□ -1
LIMCH1-216ENST00000512820 OATP04181 439 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 RPA3P35244 121 aaPredicted RBP8.79□□□□□ -1
LIMCH1-216ENST00000512820 RFC5P40937 340 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 GTF2BQ00403 316 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 SLC15A2Q16348 729 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 PTF1AQ7RTS3 328 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 KATNAL2Q8IYT4 538 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 UBA3Q8TBC4 463 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 SPIRE2Q8WWL2 714 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 CLMNQ96JQ2 1002 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 TMEM59LQ9UK28 342 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 CLEC11AQ9Y240 323 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 STXBP5LQ9Y2K9 1186 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 STARD13Q9Y3M8 1113 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 PCDHA2Q9Y5H9 948 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 ACTL7BQ9Y614 415 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 RGPD2P0DJD1 1756 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 KLHL2O95198 593 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 KRT16P08779 473 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 PAEPP09466 180 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 PYGBP11216 843 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 GPD1P21695 349 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 KPNA2P52292 529 aaKnown RBP8.79□□□□□ -1
LIMCH1-216ENST00000512820 MXD4Q14582 209 aaPredicted RBP8.79□□□□□ -1
LIMCH1-216ENST00000512820 SHROOM1Q2M3G4 852 aaPredicted RBP8.79□□□□□ -1
LIMCH1-216ENST00000512820 TTC39CQ8N584 583 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 DUOX1Q9NRD9 1551 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 RASSF9O75901 435 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 ADRA1DP25100 572 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 RASA2Q15283 850 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 ZNF518BQ9C0D4 1074 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 A1CFQ9NQ94 594 aaKnown RBP8.79□□□□□ -1
LIMCH1-216ENST00000512820 GRID1Q9ULK0 1009 aa8.79□□□□□ -1
LIMCH1-216ENST00000512820 PCDHAC2Q9Y5I4 1007 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms