RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 ITGA11Q9UKX5 1188 aa19.34■□□□□ 0.69
SQSTM1-209ENST00000504627 USP34Q70CQ2 3546 aa19.33■□□□□ 0.69
SQSTM1-209ENST00000504627 ZNF233A6NK53 670 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 FAM170BA6NMN3 283 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 PPP1R3GB7ZBB8 358 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 HUS1O60921 280 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 LRRN2O75325 713 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 KIF20AO95235 890 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 FGF19O95750 216 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 PSMC3P17980 439 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 CD72P21854 359 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 VIPR2P41587 438 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 MYL5Q02045 173 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 BFSP1Q12934 665 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 PAK1Q13153 545 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 ZNF852Q6ZMS4 543 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 TMC8Q8IU68 726 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 GUF1Q8N442 669 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 SPPL2BQ8TCT7 592 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 C2orf15Q8WU43 125 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 DEPDC1BQ8WUY9 529 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 IRF7Q92985 503 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 NKD2Q969F2 451 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 ANKRD36BP1Q96IX9 119 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 DDX23Q9BUQ8 820 aaKnown RBP19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 ATXN3LQ9H3M9 355 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 ABI2Q9NYB9 513 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 DLGAP2Q9P1A6 1054 aa19.33■□□□□ 0.68
SQSTM1-209ENST00000504627 SMTNL1A8MU46 457 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 BECN2A8MW95 431 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 EIF3DO15371 548 aaKnown RBP eCLIP19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 CD44P16070 742 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 GABRR2P28476 465 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 GDI1P31150 447 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 PRCPP42785 496 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 RBP5P82980 135 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 TSPY1Q01534 308 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 SURF1Q15526 300 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 ARHGAP15Q53QZ3 475 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 LMBRD2Q68DH5 695 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 FOXR2Q6PJQ5 311 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 VITQ6UXI7 678 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 C1orf210Q8IVY1 113 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 DHX40Q8IX18 779 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 AOPEPQ8N6M6 819 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 LRRC52Q8N7C0 313 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 DNASE1L2Q92874 299 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 E2F7Q96AV8 911 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 DHTKD1Q96HY7 919 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 LPIN3Q9BQK8 851 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 LRRC3Q9BY71 257 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 MTMR12Q9C0I1 747 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 SLC39A2Q9NP94 309 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 LTB4R2Q9NPC1 389 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 RWDD2AQ9UIY3 292 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 CTNND2Q9UQB3 1225 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 MRPS17Q9Y2R5 130 aaKnown RBP19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 MYO15AQ9UKN7 3530 aa19.32■□□□□ 0.68
SQSTM1-209ENST00000504627 GOLGA6L19H0YKK7 550 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 ZNF263O14978 683 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 NCAM2O15394 837 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 TNNC2P02585 160 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 GLULP15104 373 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 BMT2Q1RMZ1 405 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 KLHL10Q6JEL2 608 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 LUZP1Q86V48 1076 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 LRRTM3Q86VH5 581 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 YAF2Q8IY57 180 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 PDCL2Q8N4E4 241 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 ENOX1Q8TC92 643 aaKnown RBP19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 FAM84AQ96KN4 292 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 GCNAQ96QF7 691 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 NELL2Q99435 816 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 OSBPL6Q9BZF3 934 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 TRPV4Q9HBA0 871 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 KIAA1586Q9HCI6 787 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 ZNF334Q9HCZ1 680 aaPredicted RBP19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 HSPBP1Q9NZL4 362 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 MTF2Q9Y483 593 aaPredicted RBP19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 PCDHB5Q9Y5E4 795 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 SNX9Q9Y5X1 595 aa19.31■□□□□ 0.68
SQSTM1-209ENST00000504627 BICDL2A1A5D9 508 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 HEPACAM2A8MVW5 462 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 DPYSL4O14531 572 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 TPM4P67936 248 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 MYL7Q01449 175 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 MYO1EQ12965 1108 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 STXBP5Q5T5C0 1151 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 GAREM2Q75VX8 874 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 EPM2AIP1Q7L775 607 aaPredicted RBP19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 ASCL5Q7RTU5 278 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 CBWD2Q8IUF1 395 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 MFSD6LQ8IWD5 586 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 NELFCDQ8IXH7 590 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 TMEM86AQ8N2M4 240 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 RDH13Q8NBN7 331 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 ZNF507Q8TCN5 953 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 GIPC2Q8TF65 315 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 NELFBQ8WX92 580 aa19.3■□□□□ 0.68
SQSTM1-209ENST00000504627 INTS13Q9NVM9 706 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms