RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 WDTC1Q8N5D0 677 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CCHCR1Q8TD31 782 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 DENND1AQ8TEH3 1009 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 CFAP57Q96MR6 1250 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 TEX13BQ9BXU2 312 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 R3HDMLQ9H3Y0 253 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 RXFP1Q9HBX9 757 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 BAIAP2L1Q9UHR4 511 aa16.96■□□□□ 0.31
MSH5-SAPCD1-208ENST00000498473 hCG_1818297A0A087WSY0 165 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 IGKV6D-21A0A0A0MT36 114 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 FAM189A1O60320 539 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ASMTLO95671 621 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CETN2P41208 172 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 IRX1P78414 480 aaPredicted RBP16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 E2F5Q15329 346 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 RNF43Q68DV7 783 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CEP128Q6ZU80 1094 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TDRPQ86YL5 185 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 GBP7Q8N8V2 638 aaPredicted RBP16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 GIMAP7Q8NHV1 300 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MIEF2Q96C03 454 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ACSF2Q96CM8 615 aaPredicted RBP16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MCEEQ96PE7 176 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PCYT2Q99447 389 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PTPN18Q99952 460 aa16.96■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 EXOC1LA0A1B0GW35 172 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 FAM47DPA6NHR8 397 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CALB1P05937 261 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 HARSP12081 509 aaKnown RBP16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SLC8A1P32418 973 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PTPN7P35236 360 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 GPS1Q13098 491 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MOGSQ13724 837 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TARBP2Q15633 366 aaKnown RBP16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 RNASEH2BQ5TBB1 312 aaKnown RBP16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CATSPERGQ6ZRH7 1159 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 RASAL3Q86YV0 1011 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 BRSK2Q8IWQ3 736 aa16.95■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 IGF2BP3O00425 579 aaKnown RBP eCLIP16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ADCY3O60266 1144 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SPAG7O75391 227 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CDKN2BP42772 138 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ALDH5A1P51649 535 aaPredicted RBP16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 VCPP55072 806 aaKnown RBP16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 HP1BP3Q5SSJ5 553 aaPredicted RBP16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SPRYD7Q5W111 196 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 RGMBQ6NW40 437 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ASRGL1Q7L266 308 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ECHDC2Q86YB7 292 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SLC7A3Q8WY07 619 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 BRI3BPQ8WY22 251 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 NKD2Q969F2 451 aaPredicted RBP16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MS4A4AQ96JQ5 239 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CCL15-CCL14A0A0B4J2E2 113 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ALOX15BO15296 676 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MAGEB2O15479 319 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 LSM8O95777 96 aaKnown RBP16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ALADP13716 330 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MYL6P60660 151 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PPIL2Q13356 520 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ACVR2BQ13705 512 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MORF4L2Q15014 288 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PKN2Q16513 984 aaKnown RBP16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CCL15Q16663 113 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ZFYVE27Q5T4F4 411 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 DNAJC24Q6P3W2 148 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TTC25Q96NG3 672 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 KIF9Q9HAQ2 790 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ARHGEF3Q9NR81 526 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TLL2Q9Y6L7 1015 aa16.94■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 A0A0G2JLL6 359 aaPredicted RBP16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 C3orf70A6NLC5 250 aaPredicted RBP16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PRPF4O43172 522 aaKnown RBP eCLIP16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SARNPP82979 210 aaKnown RBP16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 IL9RQ01113 521 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 NR1H3Q13133 447 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 BIRC2Q13490 618 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 STXBP2Q15833 593 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TFDP3Q5H9I0 405 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PRRT2Q7Z6L0 340 aaPredicted RBP16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 WDR49Q8IV35 697 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TFAP2BQ92481 460 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 GRAMD1AQ96CP6 724 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 HAUS1Q96CS2 278 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 UBN1Q9NPG3 1134 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CISHQ9NSE2 258 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 GRID1Q9ULK0 1009 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 POC1B-GALNT4F8VUJ3 575 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ITGAVP06756 1048 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 KRT16P08779 473 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CDH5P33151 784 aaPredicted RBP16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CNTN2Q02246 1040 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 NEDD9Q14511 834 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ZNF394Q53GI3 561 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 GPAT2Q6NUI2 795 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ZPBP2Q6X784 338 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 FAM47EQ6ZV65 393 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 KIF2BQ8N4N8 673 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 NIPA2Q8N8Q9 360 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms