RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 NPAS4Q8IUM7 802 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 PASD1Q8IV76 773 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 PDCL2Q8N4E4 241 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 TMEM199Q8N511 208 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 LRRC57Q8N9N7 239 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 ANKRD52Q8NB46 1076 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 B3GALNT2Q8NCR0 500 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 GSTCDQ8NEC7 633 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 DBF4BQ8NFT6 615 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 FEZF2Q8TBJ5 459 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 WHAMMQ8TF30 809 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 FNIP1Q8TF40 1166 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 MAIP1Q8WWC4 291 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 ATRIPQ8WXE1 791 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 LPPQ93052 612 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 FAM84AQ96KN4 292 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 SENP8Q96LD8 212 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 HSFY1Q96LI6 401 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 ACBD6Q9BR61 282 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 C11orf70Q9BRQ4 267 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 TRIM62Q9BVG3 475 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 ELOVL4Q9GZR5 314 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 CARD9Q9H257 536 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 ARGLU1Q9NWB6 273 aaPredicted RBP8.94□□□□□ -0.98
SF3A1-210ENST00000498259 TSPAN16Q9UKR8 245 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 ATP11BQ9Y2G3 1177 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 ALG6Q9Y672 507 aa8.94□□□□□ -0.98
SF3A1-210ENST00000498259 SIGLEC16A6NMB1 481 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 KCNK3O14649 394 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 GABRDO14764 452 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 SYN3O14994 580 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 CTIFO43310 598 aaKnown RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 NBNO60934 754 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 TADA2AO75478 443 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 RNF8O76064 485 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 FTCDO95954 541 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 AMHP03971 560 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 CYP11A1P05108 521 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 PTPN1P18031 435 aaKnown RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 IBSPP21815 317 aaPredicted RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 SCNN1AP37088 669 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 GPD2P43304 727 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 GABRB2P47870 512 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 AARSP49588 968 aaKnown RBP eCLIP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 RWDD2BP57060 319 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 PSMC1P62191 440 aaKnown RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 AMPD2Q01433 879 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 PLCB3Q01970 1234 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 SOX4Q06945 474 aaPredicted RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 SMARCB1Q12824 385 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 PDCLQ13371 301 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 MAMLD1Q13495 774 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 MBTPS1Q14703 1052 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 HADHQ16836 314 aaKnown RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 TRIM60Q495X7 471 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 GLE1Q53GS7 698 aaKnown RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 SEL1L2Q5TEA6 688 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 C4orf50Q6ZRC1 276 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 ACOT1Q86TX2 421 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 NT5DC3Q86UY8 548 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 PALB2Q86YC2 1186 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 RHOT1Q8IXI2 618 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 ACTRT1Q8TDG2 376 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 TFAP2BQ92481 460 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 RABGGTAQ92696 567 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 ELMO3Q96BJ8 720 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 HES6Q96HZ4 224 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 SUSD3Q96L08 255 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 RUNDC3BQ96NL0 473 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 HNRNPABQ99729 332 aaKnown RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 MRPL45Q9BRJ2 306 aaKnown RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 TMEM175Q9BSA9 504 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 CARD6Q9BX69 1037 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 TLR10Q9BXR5 811 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 UBXN6Q9BZV1 441 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 SDCBP2Q9H190 292 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 ABCB6Q9NP58 842 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 OSGEPQ9NPF4 335 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 ST7Q9NRC1 585 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 DDX43Q9NXZ2 648 aaKnown RBP8.93□□□□□ -0.98
SF3A1-210ENST00000498259 SALL4Q9UJQ4 1053 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 MTUS1Q9ULD2 1270 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 L1RE1Q9UN81 338 aa8.93□□□□□ -0.98
SF3A1-210ENST00000498259 ANK1P16157 1881 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 CASTOR2A6NHX0 329 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 CCDC188H7C350 402 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 M0QZQ0 153 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 PGRMC1O00264 195 aaKnown RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 PSTPIP1O43586 416 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 BAIAP3O94812 1187 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 PROSCO94903 275 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 FBXO21O94952 628 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 TIMP1P01033 207 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 KRT7P08729 469 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 PDGFRBP09619 1106 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 FAM200BP0CF97 657 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 HSPA1AP0DMV8 641 aaKnown RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 HSPA1BP0DMV9 641 aaKnown RBP8.92□□□□□ -0.98
SF3A1-210ENST00000498259 RAG1P15918 1043 aa8.92□□□□□ -0.98
SF3A1-210ENST00000498259 COMTP21964 271 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms