RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 UNC93AQ86WB7 457 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 TTC39CQ8N584 583 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 UBR7Q8N806 425 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 RBBP8NLQ8NC74 664 aaPredicted RBP12.68□□□□□ -0.38
CUX1-210ENST00000497815 B3GALNT2Q8NCR0 500 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 MYLPFQ96A32 169 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 TNIP3Q96KP6 325 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 FAM81BQ96LP2 452 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 HEXIM2Q96MH2 286 aaKnown RBP12.68□□□□□ -0.38
CUX1-210ENST00000497815 FAM49BQ9NUQ9 324 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 ABI2Q9NYB9 513 aaPredicted RBP12.68□□□□□ -0.38
CUX1-210ENST00000497815 HCFC2Q9Y5Z7 792 aa12.68□□□□□ -0.38
CUX1-210ENST00000497815 ATG2AQ2TAZ0 1938 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 MTMR11A4FU01 709 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 SPDYE4A6NLX3 237 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 RNF225M0QZC1 329 aaPredicted RBP12.67□□□□□ -0.38
CUX1-210ENST00000497815 LINC01565O15544 149 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 CCDC130P13994 396 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 CD19P15391 556 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 ADCY1Q08828 1119 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 GPR17Q13304 367 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 DRAP1Q14919 205 aaPredicted RBP12.67□□□□□ -0.38
CUX1-210ENST00000497815 UVSSAQ2YD98 709 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 SARM1Q6SZW1 724 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 CACNA2D4Q7Z3S7 1137 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 PPFIBP1Q86W92 1011 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 SPATA2LQ8IUW3 424 aaPredicted RBP12.67□□□□□ -0.38
CUX1-210ENST00000497815 C12orf29Q8N999 325 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 SLC4A11Q8NBS3 891 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 ATAD1Q8NBU5 361 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 VN1R2Q8NFZ6 395 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 ZNF461Q8TAF7 563 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 SLC22A17Q8WUG5 538 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 TMEM176AQ96HP8 235 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 PKMYT1Q99640 499 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 MED10Q9BTT4 135 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 NAA15Q9BXJ9 866 aaKnown RBP12.67□□□□□ -0.38
CUX1-210ENST00000497815 RHOBTB2Q9BYZ6 727 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 DNAI2Q9GZS0 605 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 CYP4F11Q9HBI6 524 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 SLC27A5Q9Y2P5 690 aa12.67□□□□□ -0.38
CUX1-210ENST00000497815 HAX1O00165 279 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 FOXN3O00409 490 aaPredicted RBP12.66□□□□□ -0.38
CUX1-210ENST00000497815 CLDN5O00501 218 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 PRRG1O14668 218 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 SOAT2O75908 522 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 ABLIM3O94929 683 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 SEC24AO95486 1093 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 VNN2O95498 520 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 RFX1P22670 979 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 ADORA2BP29275 332 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 ELF1P32519 619 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 PBX1P40424 430 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 ZNF75DP51815 510 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 DUSP4Q13115 394 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 SKIV2LQ15477 1246 aaKnown RBP12.66□□□□□ -0.38
CUX1-210ENST00000497815 NFE2Q16621 373 aaPredicted RBP12.66□□□□□ -0.38
CUX1-210ENST00000497815 TPGS2Q68CL5 300 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 FAM171BQ6P995 826 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 LILRA6Q6PI73 481 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 CRYBG2Q8N1P7 616 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 TTC9BQ8N6N2 239 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 KREMEN2Q8NCW0 462 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 MYCBPAPQ8TBZ2 947 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 CPLX3Q8WVH0 158 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 SHC3Q92529 594 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 JAKMIP2Q96AA8 810 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 PCED1BQ96HM7 432 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 SPAG5Q96R06 1193 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 CDCA3Q99618 268 aaPredicted RBP12.66□□□□□ -0.38
CUX1-210ENST00000497815 SEPT5Q99719 369 aaPredicted RBP12.66□□□□□ -0.38
CUX1-210ENST00000497815 B3GNT5Q9BYG0 378 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 STK33Q9BYT3 514 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 GPR88Q9GZN0 384 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 FAM124BQ9H5Z6 455 aaPredicted RBP12.66□□□□□ -0.38
CUX1-210ENST00000497815 ACP6Q9NPH0 428 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 MAN1C1Q9NR34 630 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 CEP72Q9P209 647 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 PCDHB5Q9Y5E4 795 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 CDH23Q9H251 3354 aa12.66□□□□□ -0.38
CUX1-210ENST00000497815 GOLGA6L3A6NEY3 463 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 F8VZ95 297 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 CYP26A1O43174 497 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 GFPT2O94808 682 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 ATF2P15336 505 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 BDNFP23560 247 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 BRD2P25440 801 aaKnown RBP12.65□□□□□ -0.38
CUX1-210ENST00000497815 SSTR3P32745 418 aaPredicted RBP12.65□□□□□ -0.38
CUX1-210ENST00000497815 ZNF132P52740 706 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 MAPRE1Q15691 268 aaKnown RBP12.65□□□□□ -0.38
CUX1-210ENST00000497815 MGAT5BQ3V5L5 792 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 LIN9Q5TKA1 542 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 C4orf50Q6ZRC1 276 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 VSTM4Q8IW00 320 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 EFHBQ8N7U6 833 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 SLC7A14Q8TBB6 771 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 SLC2A14Q8TDB8 520 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 CYFIP2Q96F07 1278 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 ZNF518BQ9C0D4 1074 aa12.65□□□□□ -0.38
CUX1-210ENST00000497815 CRISPLD1Q9H336 500 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms