RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SSX2IPQ9Y2D8 614 aa8.83□□□□□ -1
USP54-215ENST00000497106 BUB1BO60566 1050 aaPredicted RBP8.83□□□□□ -1
USP54-215ENST00000497106 ZNF623O75123 536 aa8.83□□□□□ -1
USP54-215ENST00000497106 MICAL2O94851 1124 aa8.83□□□□□ -1
USP54-215ENST00000497106 ECEL1O95672 775 aa8.83□□□□□ -1
USP54-215ENST00000497106 ATP2A2P16615 1042 aaKnown RBP8.83□□□□□ -1
USP54-215ENST00000497106 RAP1GAPP47736 663 aa8.83□□□□□ -1
USP54-215ENST00000497106 NOMO3P69849 1222 aa8.83□□□□□ -1
USP54-215ENST00000497106 TRPV1Q8NER1 839 aa8.83□□□□□ -1
USP54-215ENST00000497106 SMYD3Q9H7B4 428 aa8.83□□□□□ -1
USP54-215ENST00000497106 PRDM5Q9NQX1 630 aaPredicted RBP8.83□□□□□ -1
USP54-215ENST00000497106 NOCTQ9UK39 431 aaKnown RBP8.83□□□□□ -1
USP54-215ENST00000497106 PTPRFP10586 1907 aa8.83□□□□□ -1
USP54-215ENST00000497106 TADA3O75528 432 aa8.83□□□□□ -1
USP54-215ENST00000497106 FGGP02679 453 aa8.83□□□□□ -1
USP54-215ENST00000497106 ALDH2P05091 517 aa8.83□□□□□ -1
USP54-215ENST00000497106 WARSP23381 471 aaKnown RBP8.83□□□□□ -1
USP54-215ENST00000497106 ELF1P32519 619 aa8.83□□□□□ -1
USP54-215ENST00000497106 IFFO1Q0D2I5 559 aa8.83□□□□□ -1
USP54-215ENST00000497106 TCEAL1Q15170 157 aa8.83□□□□□ -1
USP54-215ENST00000497106 C1orf220Q5T0J3 134 aa8.83□□□□□ -1
USP54-215ENST00000497106 FBXO46Q6PJ61 603 aaPredicted RBP8.83□□□□□ -1
USP54-215ENST00000497106 RFX6Q8HWS3 928 aa8.83□□□□□ -1
USP54-215ENST00000497106 CCDC117Q8IWD4 279 aaPredicted RBP8.83□□□□□ -1
USP54-215ENST00000497106 MMGT1Q8N4V1 131 aa8.83□□□□□ -1
USP54-215ENST00000497106 ACTRT1Q8TDG2 376 aa8.83□□□□□ -1
USP54-215ENST00000497106 SENP8Q96LD8 212 aa8.83□□□□□ -1
USP54-215ENST00000497106 PACSIN1Q9BY11 444 aa8.83□□□□□ -1
USP54-215ENST00000497106 ELOVL4Q9GZR5 314 aa8.83□□□□□ -1
USP54-215ENST00000497106 ERVK-5Q9HDB9 667 aa8.83□□□□□ -1
USP54-215ENST00000497106 TSPAN16Q9UKR8 245 aa8.83□□□□□ -1
USP54-215ENST00000497106 REXO2Q9Y3B8 237 aaKnown RBP8.83□□□□□ -1
USP54-215ENST00000497106 A0A0U1RQF3 1178 aa8.82□□□□□ -1
USP54-215ENST00000497106 MCF2LO15068 1137 aa8.82□□□□□ -1
USP54-215ENST00000497106 TYMPP19971 482 aa8.82□□□□□ -1
USP54-215ENST00000497106 SCNN1GP51170 649 aa8.82□□□□□ -1
USP54-215ENST00000497106 CREMQ03060 361 aa8.82□□□□□ -1
USP54-215ENST00000497106 ERCC6LQ2NKX8 1250 aa8.82□□□□□ -1
USP54-215ENST00000497106 FAM26DQ5JW98 314 aa8.82□□□□□ -1
USP54-215ENST00000497106 TMEM63BQ5T3F8 832 aa8.82□□□□□ -1
USP54-215ENST00000497106 ACOT1Q86TX2 421 aa8.82□□□□□ -1
USP54-215ENST00000497106 CCDC89Q8N998 374 aa8.82□□□□□ -1
USP54-215ENST00000497106 RNPC3Q96LT9 517 aaKnown RBP8.82□□□□□ -1
USP54-215ENST00000497106 HIPK3Q9H422 1215 aa8.82□□□□□ -1
USP54-215ENST00000497106 TMEM161AQ9NX61 479 aa8.82□□□□□ -1
USP54-215ENST00000497106 ASIC3Q9UHC3 531 aa8.82□□□□□ -1
USP54-215ENST00000497106 FAN1Q9Y2M0 1017 aa8.82□□□□□ -1
USP54-215ENST00000497106 CAPN6Q9Y6Q1 641 aa8.82□□□□□ -1
USP54-215ENST00000497106 LRRD1A4D1F6 860 aa8.82□□□□□ -1
USP54-215ENST00000497106 MYADML2A6NDP7 307 aa8.82□□□□□ -1
USP54-215ENST00000497106 CYP1A1P04798 512 aaPredicted RBP8.82□□□□□ -1
USP54-215ENST00000497106 COMTP21964 271 aa8.82□□□□□ -1
USP54-215ENST00000497106 ALDH7A1P49419 539 aaKnown RBP8.82□□□□□ -1
USP54-215ENST00000497106 EPHB4P54760 987 aa8.82□□□□□ -1
USP54-215ENST00000497106 LRRC38Q5VT99 294 aa8.82□□□□□ -1
USP54-215ENST00000497106 ZSWIM2Q8NEG5 633 aa8.82□□□□□ -1
USP54-215ENST00000497106 RSAD2Q8WXG1 361 aa8.82□□□□□ -1
USP54-215ENST00000497106 SMARCD1Q96GM5 515 aa8.82□□□□□ -1
USP54-215ENST00000497106 MCEEQ96PE7 176 aa8.82□□□□□ -1
USP54-215ENST00000497106 ZIC5Q96T25 663 aa8.82□□□□□ -1
USP54-215ENST00000497106 KRT12Q99456 494 aa8.82□□□□□ -1
USP54-215ENST00000497106 ZBED2Q9BTP6 218 aa8.82□□□□□ -1
USP54-215ENST00000497106 ELAC1Q9H777 363 aaKnown RBP8.82□□□□□ -1
USP54-215ENST00000497106 DDX43Q9NXZ2 648 aaKnown RBP8.82□□□□□ -1
USP54-215ENST00000497106 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.82□□□□□ -1
USP54-215ENST00000497106 V9GYY5 206 aaPredicted RBP8.82□□□□□ -1
USP54-215ENST00000497106 GOLGA6CA6NDK9 693 aa8.82□□□□□ -1
USP54-215ENST00000497106 GOLGA6BA6NDN3 693 aa8.82□□□□□ -1
USP54-215ENST00000497106 PITPNM1O00562 1244 aa8.82□□□□□ -1
USP54-215ENST00000497106 PFKMP08237 780 aa8.82□□□□□ -1
USP54-215ENST00000497106 GOLGA6DP0CG33 693 aa8.82□□□□□ -1
USP54-215ENST00000497106 LRPAP1P30533 357 aa8.82□□□□□ -1
USP54-215ENST00000497106 ASPAP45381 313 aa8.82□□□□□ -1
USP54-215ENST00000497106 MCCD1P59942 119 aaPredicted RBP8.82□□□□□ -1
USP54-215ENST00000497106 CAV1Q03135 178 aa8.82□□□□□ -1
USP54-215ENST00000497106 BOLA3Q53S33 107 aa8.82□□□□□ -1
USP54-215ENST00000497106 OVOS1Q6IE37 1185 aa8.82□□□□□ -1
USP54-215ENST00000497106 LCLAT1Q6UWP7 414 aa8.82□□□□□ -1
USP54-215ENST00000497106 STK32AQ8WU08 396 aa8.82□□□□□ -1
USP54-215ENST00000497106 TBCBQ99426 244 aa8.82□□□□□ -1
USP54-215ENST00000497106 IRX2Q9BZI1 471 aaPredicted RBP8.82□□□□□ -1
USP54-215ENST00000497106 NACA2Q9H009 215 aa8.82□□□□□ -1
USP54-215ENST00000497106 APOBEC3GQ9HC16 384 aaKnown RBP8.82□□□□□ -1
USP54-215ENST00000497106 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.82□□□□□ -1
USP54-215ENST00000497106 GDAP2Q9NXN4 497 aa8.82□□□□□ -1
USP54-215ENST00000497106 GOLGA6AQ9NYA3 693 aa8.82□□□□□ -1
USP54-215ENST00000497106 PDGFRBP09619 1106 aa8.82□□□□□ -1
USP54-215ENST00000497106 RALAP11233 206 aa8.82□□□□□ -1
USP54-215ENST00000497106 CPB1P15086 417 aa8.82□□□□□ -1
USP54-215ENST00000497106 LMAN1P49257 510 aa8.82□□□□□ -1
USP54-215ENST00000497106 FAM193AP78312 1265 aa8.82□□□□□ -1
USP54-215ENST00000497106 MAP3K21Q5TCX8 1036 aa8.82□□□□□ -1
USP54-215ENST00000497106 ARHGAP17Q68EM7 881 aa8.82□□□□□ -1
USP54-215ENST00000497106 CC2D1AQ6P1N0 951 aaPredicted RBP8.82□□□□□ -1
USP54-215ENST00000497106 LRRC43Q8N309 656 aa8.82□□□□□ -1
USP54-215ENST00000497106 IFT81Q8WYA0 676 aa8.82□□□□□ -1
USP54-215ENST00000497106 ZBTB10Q96DT7 871 aa8.82□□□□□ -1
USP54-215ENST00000497106 CNPY3Q9BT09 278 aa8.82□□□□□ -1
USP54-215ENST00000497106 TRMT13Q9NUP7 481 aaKnown RBP8.82□□□□□ -1
USP54-215ENST00000497106 FAM49BQ9NUQ9 324 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms