RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ITIH2P19823 946 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 CTXN3Q4LDR2 81 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 LRRC8EQ6NSJ5 796 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 SHCBP1Q8NEM2 672 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 PPP1R36Q96LQ0 422 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 ETNK1Q9HBU6 452 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 DDTLA6NHG4 134 aaPredicted RBP13.7□□□□□ -0.22
PTPRF-215ENST00000496447 SUPT3HB4E1H0 165 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 C5orf58C9J3I9 102 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 M0QYT0 321 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 CYB561D2O14569 222 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 CST8O60676 142 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 COMTP21964 271 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 SERPINB9P50453 376 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 KRT72Q14CN4 511 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 NBPF20Q3BBV1 942 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 KLHDC7AQ5VTJ3 777 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 ARL8AQ96BM9 186 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 FAM210AQ96ND0 272 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 TRIM51Q9BSJ1 452 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 MANSC4A6NHS7 340 aaPredicted RBP13.7□□□□□ -0.22
PTPRF-215ENST00000496447 TMEM253P0C7T8 217 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 DEFB128Q7Z7B8 93 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 TXNRD3Q86VQ6 643 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 GRAMD1AQ96CP6 724 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 F5H5T6 163 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 ANGPT2O15123 496 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 H2AFXP16104 143 aaPredicted RBP13.7□□□□□ -0.22
PTPRF-215ENST00000496447 ZC3H12BQ5HYM0 836 aaKnown RBP13.7□□□□□ -0.22
PTPRF-215ENST00000496447 RFWD2Q8NHY2 731 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 CPB2Q96IY4 423 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 TASP1Q9H6P5 420 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 CRLS1Q9UJA2 301 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 CKMP06732 381 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 SREBF1P36956 1147 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 SLC26A2P50443 739 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 ABCE1P61221 599 aaKnown RBP13.7□□□□□ -0.22
PTPRF-215ENST00000496447 PCNX4Q63HM2 1172 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 MOXD1Q6UVY6 613 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 FAM118BQ9BPY3 351 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 MTMR12Q9C0I1 747 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 SPATC1LQ9H0A9 340 aa13.7□□□□□ -0.22
PTPRF-215ENST00000496447 ZNF185O15231 689 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 POLBP06746 335 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 IRAK1P51617 712 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 POLD3Q15054 466 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 MTFR1Q15390 333 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 E4F1Q66K89 784 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 NAPEPLDQ6IQ20 393 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 PATL1Q86TB9 770 aaKnown RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 ZBTB10Q96DT7 871 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 APOL5Q9BWW9 433 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 ADAM33Q9BZ11 813 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 WWP1Q9H0M0 922 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 PRR23AA6NEV1 266 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 GUCY1A3Q02108 690 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 TMEM154Q6P9G4 183 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 OOSP2Q86WS3 158 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 MIB1Q86YT6 1006 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 TRIM48Q8IWZ4 208 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 ADGRF2Q8IZF7 708 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 SGSM3Q96HU1 749 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 SNX5Q9Y5X3 404 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 HSPA9P38646 679 aaKnown RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 RPL10AP62906 217 aaKnown RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 SFSWAPQ12872 951 aaKnown RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 NYAP1Q6ZVC0 841 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 FAM161BQ96MY7 647 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 HPS5Q9UPZ3 1129 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 CHMP2BQ9UQN3 213 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 MED24O75448 989 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 THP07101 528 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 ZNF286BP0CG31 522 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 SPRP35270 261 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 ZNF200P98182 395 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 GJB7Q6PEY0 223 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 ACOT1Q86TX2 421 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.69□□□□□ -0.228e-7■■■■■ 32.1
PTPRF-215ENST00000496447 LRRC1Q9BTT6 524 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 CD248Q9HCU0 757 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 WARS2Q9UGM6 360 aaKnown RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 DSEQ9UL01 958 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 ASS1P00966 412 aaKnown RBP13.69□□□□□ -0.22
PTPRF-215ENST00000496447 CHRM3P20309 590 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 HERVK_113P62684 666 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 ORC1Q13415 861 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 RABGAP1LQ5R372 815 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 SLC25A13Q9UJS0 675 aa13.69□□□□□ -0.22
PTPRF-215ENST00000496447 NFIBO00712 420 aa13.68□□□□□ -0.22
PTPRF-215ENST00000496447 PTGER2P43116 358 aa13.68□□□□□ -0.22
PTPRF-215ENST00000496447 PTK6Q13882 451 aa13.68□□□□□ -0.22
PTPRF-215ENST00000496447 NR1I3Q14994 352 aa13.68□□□□□ -0.22
PTPRF-215ENST00000496447 FAM83AQ86UY5 434 aa13.68□□□□□ -0.22
PTPRF-215ENST00000496447 AKT1S1Q96B36 256 aa13.68□□□□□ -0.22
PTPRF-215ENST00000496447 NRXN1Q9ULB1 1477 aa13.68□□□□□ -0.22
PTPRF-215ENST00000496447 RBP3P10745 1247 aa13.68□□□□□ -0.22
PTPRF-215ENST00000496447 KRT4P19013 534 aa13.68□□□□□ -0.22
PTPRF-215ENST00000496447 CYLC2Q14093 348 aaPredicted RBP13.68□□□□□ -0.22
PTPRF-215ENST00000496447 SLC44A4Q53GD3 710 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms