RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 CCINQ13939 588 aa23.77■■□□□ 1.4
HDDC3-203ENST00000494993 ITPRIPL2Q3MIP1 535 aa23.77■■□□□ 1.4
HDDC3-203ENST00000494993 CCDC73Q6ZRK6 1079 aa23.77■■□□□ 1.4
HDDC3-203ENST00000494993 PRR23BQ6ZRT6 265 aa23.77■■□□□ 1.4
HDDC3-203ENST00000494993 PDCL2Q8N4E4 241 aa23.77■■□□□ 1.4
HDDC3-203ENST00000494993 CACTINQ8WUQ7 758 aaKnown RBP23.77■■□□□ 1.4
HDDC3-203ENST00000494993 LEO1Q8WVC0 666 aaPredicted RBP23.77■■□□□ 1.4
HDDC3-203ENST00000494993 L1RE1Q9UN81 338 aa23.77■■□□□ 1.4
HDDC3-203ENST00000494993 PTPRDP23468 1912 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 HELZP42694 1942 aaKnown RBP23.76■■□□□ 1.39
HDDC3-203ENST00000494993 FRMD3A2A2Y4 597 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 DDX6P26196 483 aaKnown RBP eCLIP23.76■■□□□ 1.39
HDDC3-203ENST00000494993 STAT6P42226 847 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 GPR15P49685 360 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 NLRP12P59046 1061 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 NFE2Q16621 373 aaPredicted RBP23.76■■□□□ 1.39
HDDC3-203ENST00000494993 SYCP3Q8IZU3 236 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 SYNPOQ8N3V7 929 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 LRRC52Q8N7C0 313 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 ACBD6Q9BR61 282 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 PI4K2AQ9BTU6 479 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 FGFBP2Q9BYJ0 223 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 MORC2Q9Y6X9 1032 aaPredicted RBP23.76■■□□□ 1.39
HDDC3-203ENST00000494993 EML5Q05BV3 1969 aa23.76■■□□□ 1.39
HDDC3-203ENST00000494993 MYO16Q9Y6X6 1858 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 GOLGA8IPA6NC78 632 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 GOLGA8JA6NMD2 632 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 HUS1O60921 280 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 PRPF40AO75400 957 aaKnown RBP23.75■■□□□ 1.39
HDDC3-203ENST00000494993 CSH1P0DML2 217 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 CSH2P0DML3 217 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 AVPR1AP37288 418 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 BFSP1Q12934 665 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 SIM2Q14190 667 aaPredicted RBP23.75■■□□□ 1.39
HDDC3-203ENST00000494993 LONP2Q86WA8 852 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 TMEM86AQ8N2M4 240 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 MAB21L3Q8N8X9 362 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 STKLD1Q8NE28 680 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 CXorf38Q8TB03 319 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 CBWD1Q9BRT8 395 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 GKN1Q9NS71 199 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 C2orf42Q9NWW7 574 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 DDX43Q9NXZ2 648 aaKnown RBP23.75■■□□□ 1.39
HDDC3-203ENST00000494993 ITGA11Q9UKX5 1188 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 CDV3Q9UKY7 258 aaKnown RBP23.75■■□□□ 1.39
HDDC3-203ENST00000494993 CCL26Q9Y258 94 aa23.75■■□□□ 1.39
HDDC3-203ENST00000494993 A0A087X0B3 334 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 HRO43593 1189 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 EXTL3O43909 919 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 RETP07949 1114 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 CNR2P34972 360 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 ATXN1P54253 815 aaKnown RBP23.74■■□□□ 1.39
HDDC3-203ENST00000494993 MYL7Q01449 175 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 SPEM2Q0P670 501 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 INTS6LQ5JSJ4 861 aaKnown RBP23.74■■□□□ 1.39
HDDC3-203ENST00000494993 SCARA3Q6AZY7 606 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 USP13Q92995 863 aaPredicted RBP23.74■■□□□ 1.39
HDDC3-203ENST00000494993 FAM84AQ96KN4 292 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 USP28Q96RU2 1077 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 FAM83CQ9BQN1 747 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 PANK2Q9BZ23 570 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 KIF9Q9HAQ2 790 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 ABCB6Q9NP58 842 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 HPS4Q9NQG7 708 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 PANK4Q9NVE7 773 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 GDAP2Q9NXN4 497 aa23.74■■□□□ 1.39
HDDC3-203ENST00000494993 MAGED2Q9UNF1 606 aaPredicted RBP23.74■■□□□ 1.39
HDDC3-203ENST00000494993 KIAA1549LQ6ZVL6 1849 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 SOBPA7XYQ1 873 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 ACAT1P24752 427 aaKnown RBP23.73■■□□□ 1.39
HDDC3-203ENST00000494993 SRSF5Q13243 272 aaKnown RBP23.73■■□□□ 1.39
HDDC3-203ENST00000494993 SLC39A14Q15043 492 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 SDHAF4Q5VUM1 108 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 TXNDC8Q6A555 127 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 HEATR6Q6AI08 1181 aaKnown RBP23.73■■□□□ 1.39
HDDC3-203ENST00000494993 CSGALNACT2Q8N6G5 542 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 NOC3LQ8WTT2 800 aaKnown RBP23.73■■□□□ 1.39
HDDC3-203ENST00000494993 MRPS31Q92665 395 aaKnown RBP23.73■■□□□ 1.39
HDDC3-203ENST00000494993 PKMYT1Q99640 499 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 PCIF1Q9H4Z3 704 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 TMEM206Q9H813 350 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 PDE11AQ9HCR9 933 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 TDP1Q9NUW8 608 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 SDK1Q7Z5N4 2213 aa23.73■■□□□ 1.39
HDDC3-203ENST00000494993 LRP3O75074 770 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 PRPF6O94906 941 aaKnown RBP23.72■■□□□ 1.39
HDDC3-203ENST00000494993 KRT19P08727 400 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 TMEM191BP0C7N4 346 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 CYP2F1P24903 491 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 HOXA6P31267 233 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 RPL10AP62906 217 aaKnown RBP23.72■■□□□ 1.39
HDDC3-203ENST00000494993 RBP5P82980 135 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 RUNX3Q13761 415 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 DDR2Q16832 855 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 MON1AQ86VX9 555 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 OSTM1Q86WC4 334 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 SPATA18Q8TC71 538 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 MTMR12Q9C0I1 747 aa23.72■■□□□ 1.39
HDDC3-203ENST00000494993 UXTQ9UBK9 157 aaPredicted RBP23.72■■□□□ 1.39
HDDC3-203ENST00000494993 SIX4Q9UIU6 781 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms