RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	LDHA	P00338	332 aa	Known RBP	12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	KRT19	P08727	400 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	ZSCAN22	P10073	491 aa	Predicted RBP	12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	CCNE1	P24864	410 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	PNPLA4	P41247	253 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	SOWAHA	Q2M3V2	549 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	ZNF528	Q3MIS6	628 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	INTS6L	Q5JSJ4	861 aa	Known RBP	12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	FAM26F	Q5R3K3	315 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	CNNM4	Q6P4Q7	775 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728		Q6ZS52	159 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	ITIH5	Q86UX2	942 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	THEM5	Q8N1Q8	247 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	CSGALNACT2	Q8N6G5	542 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	LRRC52	Q8N7C0	313 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	SPRYD3	Q8NCJ5	442 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	LEO1	Q8WVC0	666 aa	Predicted RBP	12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	SCFD1	Q8WVM8	642 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	KBTBD7	Q8WVZ9	684 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	ZNF396	Q96N95	335 aa	Predicted RBP	12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	SLC46A2	Q9BY10	475 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	TMEM206	Q9H813	350 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	AGPAT3	Q9NRZ7	376 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	INTS13	Q9NVM9	706 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	GDAP2	Q9NXN4	497 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	FBXO4	Q9UKT5	387 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	PCDHA7	Q9UN72	937 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	SNX9	Q9Y5X1	595 aa		12.52	□□□□□ -0.41
VTI1A-208	ENST00000494728	CHD8	Q9HCK8	2581 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	MYBPHL	A2RUH7	354 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	GABRD	O14764	452 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	CLIC2	O15247	247 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	CHAD	O15335	359 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	EIF3D	O15371	548 aa	Known RBP eCLIP	12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	POLR2D	O15514	142 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	PRPF40A	O75400	957 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	F11	P03951	625 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	TMEM191B	P0C7N4	346 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	CHRNB1	P11230	501 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	CYP2F1	P24903	491 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	CTH	P32929	405 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	MAGEA9	P43362	315 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	TUFM	P49411	452 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	NLRP12	P59046	1061 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	PSMC1	P62191	440 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	TSPY1	Q01534	308 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	SATB1	Q01826	763 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	DNM1	Q05193	864 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	CUL4B	Q13620	913 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	VEPH1	Q14D04	833 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	DDR2	Q16832	855 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	RESP18	Q5W5W9	173 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	LIMS2	Q7Z4I7	341 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	NELFCD	Q8IXH7	590 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	ADGRF2	Q8IZF7	708 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	ZBTB44	Q8NCP5	570 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	ZNF507	Q8TCN5	953 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	KCNG4	Q8TDN1	519 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	C2orf15	Q8WU43	125 aa	Known RBP	12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	FAM3C	Q92520	227 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	C7orf25	Q9BPX7	421 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	GPR88	Q9GZN0	384 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	TASP1	Q9H6P5	420 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	CRTAC1	Q9NQ79	661 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	GTF3C4	Q9UKN8	822 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	PCDHB5	Q9Y5E4	795 aa		12.51	□□□□□ -0.41
VTI1A-208	ENST00000494728	OTOL1	A6NHN0	477 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	SPECC1L-ADORA2A	F8WAN1	911 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	MAN2B1	O00754	1011 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	HUS1	O60921	280 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	LILRB5	O75023	590 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	LMO2	P25791	158 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	DMWD	Q09019	674 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	SNRNP35	Q16560	246 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	NAIF1	Q69YI7	327 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	TXNDC8	Q6A555	127 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	TRIM68	Q6AZZ1	485 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	ZC3H14	Q6PJT7	736 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	UNC13D	Q70J99	1090 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	HSCB	Q8IWL3	235 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	KIAA2013	Q8IYS2	634 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	DCP1B	Q8IZD4	617 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	CMTM8	Q8IZV2	173 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	TOP6BL	Q8N6T0	577 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	MAB21L3	Q8N8X9	362 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	IQUB	Q8NA54	791 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	PLEKHO2	Q8TD55	490 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	CACTIN	Q8WUQ7	758 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	USP13	Q92995	863 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	SLC22A12	Q96S37	553 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	NELL2	Q99435	816 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	ACBD6	Q9BR61	282 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	CUEDC2	Q9H467	287 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	LMAN1L	Q9HAT1	526 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	HPS4	Q9NQG7	708 aa		12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	MAGED2	Q9UNF1	606 aa	Predicted RBP	12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	MRPS17	Q9Y2R5	130 aa	Known RBP	12.5	□□□□□ -0.41
VTI1A-208	ENST00000494728	UBE4B	O95155	1302 aa		12.49	□□□□□ -0.41
VTI1A-208	ENST00000494728	ZNF233	A6NK53	670 aa		12.49	□□□□□ -0.41
VTI1A-208	ENST00000494728	ACTN4	O43707	911 aa	Known RBP	12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms