RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 ZNF197O14709 1029 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 HCRTO43612 131 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 PAX3P23760 479 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 ACAT1P24752 427 aaKnown RBP11.47□□□□□ -0.57
COL6A3-214ENST00000493608 CLCN5P51795 746 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 RBP5P82980 135 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 STK4Q13043 487 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 SNW1Q13573 536 aaKnown RBP11.47□□□□□ -0.57
COL6A3-214ENST00000493608 GRM2Q14416 872 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 TEAD2Q15562 447 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 MGAT5BQ3V5L5 792 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 FAM78AQ5JUQ0 283 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 FAM200AQ8TCP9 573 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 CCDC127Q96BQ5 260 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 ZNF560Q96MR9 790 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 LPIN3Q9BQK8 851 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 LRRC3Q9BY71 257 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 ZNF334Q9HCZ1 680 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-214ENST00000493608 AVENQ9NQS1 362 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-214ENST00000493608 ASAH2Q9NR71 780 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 TMLHEQ9NVH6 421 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 ABI2Q9NYB9 513 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-214ENST00000493608 GDE1Q9NZC3 331 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 ITGA11Q9UKX5 1188 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 L1RE1Q9UN81 338 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 SNX9Q9Y5X1 595 aa11.47□□□□□ -0.57
COL6A3-214ENST00000493608 A0A1W2PRU2 124 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 KIAA0391O15091 583 aaKnown RBP11.46□□□□□ -0.57
COL6A3-214ENST00000493608 HUS1O60921 280 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 CST3P01034 146 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-214ENST00000493608 TNNC2P02585 160 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 DCNP07585 359 aaKnown RBP11.46□□□□□ -0.57
COL6A3-214ENST00000493608 DLATP10515 647 aaKnown RBP11.46□□□□□ -0.57
COL6A3-214ENST00000493608 AOC1P19801 751 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 PNPLA4P41247 253 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 VIPR2P41587 438 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 SYKP43405 635 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 NDUFA8P51970 172 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 SNRNP35Q16560 246 aaKnown RBP11.46□□□□□ -0.57
COL6A3-214ENST00000493608 CCDC142Q17RM4 750 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 KNOP1Q1ED39 458 aaKnown RBP11.46□□□□□ -0.57
COL6A3-214ENST00000493608 DUOXA2Q1HG44 320 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 STXBP5Q5T5C0 1151 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 DNAJB7Q7Z6W7 309 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-214ENST00000493608 OSTM1Q86WC4 334 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 TMC8Q8IU68 726 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 PDCL2Q8N4E4 241 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 XXYLT1Q8NBI6 393 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 SHKBP1Q8TBC3 707 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 GIPC2Q8TF65 315 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 USB1Q9BQ65 265 aaKnown RBP11.46□□□□□ -0.57
COL6A3-214ENST00000493608 FOXQ1Q9C009 403 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 SLITRK6Q9H5Y7 841 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 TBC1D17Q9HA65 648 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 ARHGEF3Q9NR81 526 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 SLC2A4RGQ9NR83 387 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 EXOC1Q9NV70 894 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 DDX43Q9NXZ2 648 aaKnown RBP11.46□□□□□ -0.57
COL6A3-214ENST00000493608 HPSEQ9Y251 543 aa11.46□□□□□ -0.57
COL6A3-214ENST00000493608 ZNF638Q14966 1978 aaKnown RBP11.46□□□□□ -0.58
COL6A3-214ENST00000493608 UBE4BO95155 1302 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 CACNA1HO95180 2353 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 LRRN2O75325 713 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 ECI2O75521 394 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 DXOO77932 396 aaKnown RBP11.45□□□□□ -0.58
COL6A3-214ENST00000493608 TNNI1P19237 187 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 CD72P21854 359 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 FCARP24071 287 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 GPR15P49685 360 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 EPHA5P54756 1037 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 CYP24A1Q07973 514 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 PLD1Q13393 1074 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 SURF1Q15526 300 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 SOWAHAQ2M3V2 549 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 SLC44A4Q53GD3 710 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 SDHAF4Q5VUM1 108 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 HS2ST1Q7LGA3 356 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 DCP1BQ8IZD4 617 aaKnown RBP11.45□□□□□ -0.58
COL6A3-214ENST00000493608 LRRC52Q8N7C0 313 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 FSIP1Q8NA03 581 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 KIAA0895Q8NCT3 520 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 STKLD1Q8NE28 680 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 ATOH1Q92858 354 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-214ENST00000493608 HPDLQ96IR7 371 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 ASB16Q96NS5 453 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 FNBP1Q96RU3 617 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 PRRX2Q99811 253 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 PI4K2AQ9BTU6 479 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 GOLPH3LQ9H4A5 285 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 KIAA1586Q9HCI6 787 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 ZFP14Q9HCL3 533 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 GTF3C4Q9UKN8 822 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 R3HCC1Q9Y3T6 440 aaKnown RBP11.45□□□□□ -0.58
COL6A3-214ENST00000493608 MIA3Q5JRA6 1907 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 DENND4CQ5VZ89 1909 aa11.45□□□□□ -0.58
COL6A3-214ENST00000493608 EXOC3O60645 756 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 ATP2C2O75185 946 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 PRPF40AO75400 957 aaKnown RBP11.44□□□□□ -0.58
COL6A3-214ENST00000493608 MICAL2O94851 1124 aa11.44□□□□□ -0.58
COL6A3-214ENST00000493608 RPN1P04843 607 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms