RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ACSF2Q96CM8 615 aaPredicted RBP17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CNOT6LQ96LI5 555 aaKnown RBP17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ZNF512Q96ME7 567 aaPredicted RBP17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CORO1BQ9BR76 489 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 BCO2Q9BYV7 579 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 NIF3L1Q9GZT8 377 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ABCB6Q9NP58 842 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 TMEM63CQ9P1W3 806 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CEP72Q9P209 647 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 COQ4Q9Y3A0 265 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 NME7Q9Y5B8 376 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 TNFRSF10AO00220 468 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ATP2C2O75185 946 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 LRRN2O75325 713 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 RHOP08100 348 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 HAPLN1P10915 354 aaPredicted RBP17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PTPN2P17706 415 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PTMSP20962 102 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CCDC142Q17RM4 750 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 WDR44Q5JSH3 913 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 IQCEQ6IPM2 695 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 C4orf50Q6ZRC1 276 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 SPATA2LQ8IUW3 424 aaPredicted RBP17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PLCD3Q8N3E9 789 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MYLPFQ96A32 169 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 FUBP3Q96I24 572 aaKnown RBP eCLIP17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 DNAJC25Q9H1X3 360 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 DPEP3Q9H4B8 488 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CYP3A43Q9HB55 503 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CRTAC1Q9NQ79 661 aa17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 AVENQ9NQS1 362 aaPredicted RBP17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.38■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PMM2O15305 246 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PTPN1P18031 435 aaKnown RBP17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 GBP2P32456 591 aaPredicted RBP17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 KCNH2Q12809 1159 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 STX1AQ16623 288 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CFAP221Q4G0U5 840 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MDH1BQ5I0G3 518 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CAVIN1Q6NZI2 390 aaKnown RBP17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ZDHHC14Q8IZN3 488 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 B3GALNT2Q8NCR0 500 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MYCBPAPQ8TBZ2 947 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 FAXDC2Q96IV6 333 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 THAP9Q9H5L6 903 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ANO10Q9NW15 660 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ASB3Q9Y575 518 aa17.37■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 P4HA2O15460 535 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 AFPP02771 609 aaKnown RBP17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ATF6P18850 670 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CYP2F1P24903 491 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 NDST1P52848 882 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CYP27A1Q02318 531 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 INCA1Q0VD86 236 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CETN1Q12798 172 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 VEPH1Q14D04 833 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PDZD4Q76G19 769 aaPredicted RBP17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ITIH5Q86UX2 942 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 UNC93AQ86WB7 457 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 IRF2BP1Q8IU81 584 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 RNF135Q8IUD6 432 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CREBRFQ8IUR6 639 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 FAM114A1Q8IWE2 563 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 LEMD2Q8NC56 503 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ITFG1Q8TB96 612 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 FAM200AQ8TCP9 573 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PSMG2Q969U7 264 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PCED1BQ96HM7 432 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 TNIP3Q96KP6 325 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MYADMQ96S97 322 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 LPIN3Q9BQK8 851 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ASAH2Q9NR71 780 aa17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MAGEC2Q9UBF1 373 aaPredicted RBP17.36■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ZNF197O14709 1029 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MAGEA11P43364 429 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 EPHA5P54756 1037 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 RPL10AP62906 217 aaKnown RBP17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 SLC5A9Q2M3M2 681 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 KLHL40Q2TBA0 621 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CYP4A22Q5TCH4 519 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 HS6ST3Q8IZP7 471 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 TATDN2Q93075 761 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 EPS15L1Q9UBC2 864 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 HMGXB4Q9UGU5 601 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CDH7Q9ULB5 785 aa17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MRPS23Q9Y3D9 190 aaKnown RBP17.35■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MYL4P12829 197 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 CD58P19256 250 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 BDNFP23560 247 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MTIF2P46199 727 aaKnown RBP17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 GPR15P49685 360 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PRSS36Q5K4E3 855 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 VSTM1Q6UX27 236 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 C11orf57Q6ZUT1 292 aaPredicted RBP17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 DNAJB7Q7Z6W7 309 aaPredicted RBP17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ACOT1Q86TX2 421 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 TMC8Q8IU68 726 aa17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ENOX1Q8TC92 643 aaKnown RBP17.34■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 GIPC2Q8TF65 315 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms