RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CUL4AQ13619 759 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 SDHAF4Q5VUM1 108 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 RRAGBQ5VZM2 374 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 TRIM68Q6AZZ1 485 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 PKN3Q6P5Z2 889 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.35□□□□□ -0.27
CPSF3-204ENST00000489403 WDR5BQ86VZ2 330 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 SYNPOQ8N3V7 929 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 PDCL2Q8N4E4 241 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 MAB21L3Q8N8X9 362 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 CXorf38Q8TB03 319 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 LEO1Q8WVC0 666 aaPredicted RBP13.35□□□□□ -0.27
CPSF3-204ENST00000489403 USP13Q92995 863 aaPredicted RBP13.35□□□□□ -0.27
CPSF3-204ENST00000489403 CHFRQ96EP1 664 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 CLIC6Q96NY7 704 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 ACCSQ96QU6 501 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 FAM83CQ9BQN1 747 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 PI4K2AQ9BTU6 479 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 FGFBP2Q9BYJ0 223 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 GKN1Q9NS71 199 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 SEMA4GQ9NTN9 838 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 CCDC39Q9UFE4 941 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 ZMYM5Q9UJ78 669 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 AGAP1Q9UPQ3 857 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 EXOC7Q9UPT5 735 aa13.35□□□□□ -0.27
CPSF3-204ENST00000489403 SRPRBQ9Y5M8 271 aaKnown RBP13.35□□□□□ -0.27
CPSF3-204ENST00000489403 RALGAPA1Q6GYQ0 2036 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 OTOL1A6NHN0 477 aaPredicted RBP13.34□□□□□ -0.27
CPSF3-204ENST00000489403 TULP1O00294 542 aaPredicted RBP13.34□□□□□ -0.27
CPSF3-204ENST00000489403 EXTL3O43909 919 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 PRPF40AO75400 957 aaKnown RBP13.34□□□□□ -0.27
CPSF3-204ENST00000489403 CSH1P0DML2 217 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 CSH2P0DML3 217 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 GAP43P17677 238 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 GARTP22102 1010 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 DDX6P26196 483 aaKnown RBP eCLIP13.34□□□□□ -0.27
CPSF3-204ENST00000489403 HOXA6P31267 233 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 TSPY1Q01534 308 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 BFSP1Q12934 665 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 RESTQ13127 1097 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 RUNX3Q13761 415 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 TMEM196Q5HYL7 178 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 TXNDC8Q6A555 127 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 FAM173BQ6P4H8 233 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 PRR23CQ6ZRP0 262 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 SV2BQ7L1I2 683 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 NETO1Q8TDF5 533 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 FAM84AQ96KN4 292 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 PKMYT1Q99640 499 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 ACBD6Q9BR61 282 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 EBF3Q9H4W6 596 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 KIF9Q9HAQ2 790 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 OLFML3Q9NRN5 406 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 TDP1Q9NUW8 608 aa13.34□□□□□ -0.27
CPSF3-204ENST00000489403 DDX43Q9NXZ2 648 aaKnown RBP13.34□□□□□ -0.27
CPSF3-204ENST00000489403 RBAKQ9NYW8 714 aaPredicted RBP13.34□□□□□ -0.27
CPSF3-204ENST00000489403 MAGED2Q9UNF1 606 aaPredicted RBP13.34□□□□□ -0.27
CPSF3-204ENST00000489403 A0A087X0B3 334 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.33□□□□□ -0.28
CPSF3-204ENST00000489403 FRMD3A2A2Y4 597 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 GOLGA8IPA6NC78 632 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 GOLGA8JA6NMD2 632 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 LDHAP00338 332 aaKnown RBP13.33□□□□□ -0.28
CPSF3-204ENST00000489403 IDEP14735 1019 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 ACAT1P24752 427 aaKnown RBP13.33□□□□□ -0.28
CPSF3-204ENST00000489403 CYP2F1P24903 491 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 TXLNAP40222 546 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 CSRP2Q16527 193 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 NFE2Q16621 373 aaPredicted RBP13.33□□□□□ -0.28
CPSF3-204ENST00000489403 DDR2Q16832 855 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 CCDC142Q17RM4 750 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 INTS6LQ5JSJ4 861 aaKnown RBP13.33□□□□□ -0.28
CPSF3-204ENST00000489403 FSTL4Q6MZW2 842 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 CEP68Q76N32 757 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 OSTM1Q86WC4 334 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 FAM160A2Q8N612 972 aaPredicted RBP13.33□□□□□ -0.28
CPSF3-204ENST00000489403 LRRC52Q8N7C0 313 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 MRPS31Q92665 395 aaKnown RBP13.33□□□□□ -0.28
CPSF3-204ENST00000489403 CBWD1Q9BRT8 395 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 ITGA11Q9UKX5 1188 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 GREB1Q4ZG55 1949 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 ANAPC1Q9H1A4 1944 aa13.33□□□□□ -0.28
CPSF3-204ENST00000489403 EML5Q05BV3 1969 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 SOBPA7XYQ1 873 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 TRDMT1O14717 391 aaKnown RBP13.32□□□□□ -0.28
CPSF3-204ENST00000489403 SLC30A4O14863 429 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 HCRTO43612 131 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 GDF9O60383 454 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 HUS1O60921 280 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 NOL4O94818 638 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 ARSAP15289 507 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 PXNP49023 591 aaPredicted RBP13.32□□□□□ -0.28
CPSF3-204ENST00000489403 MYL7Q01449 175 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 CEBPZQ03701 1054 aaKnown RBP13.32□□□□□ -0.28
CPSF3-204ENST00000489403 GRSF1Q12849 480 aaKnown RBP eCLIP13.32□□□□□ -0.28
CPSF3-204ENST00000489403 ZNF268Q14587 947 aaPredicted RBP13.32□□□□□ -0.28
CPSF3-204ENST00000489403 MON1AQ86VX9 555 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 TMEM86AQ8N2M4 240 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 CSGALNACT2Q8N6G5 542 aa13.32□□□□□ -0.28
CPSF3-204ENST00000489403 CACTINQ8WUQ7 758 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms