RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PPP4R3AQ6IN85 833 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 NAPRTQ6XQN6 538 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 PPM1NQ8N819 430 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 RITA1Q96K30 269 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 LYZL4Q96KX0 146 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 FAM118BQ9BPY3 351 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 FSD1LQ9BXM9 530 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 GPR35Q9HC97 309 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 MAN1C1Q9NR34 630 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 CFAP97Q9P2B7 532 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 RAD54BQ9Y620 910 aa4.46□□□□□ -1.7
SMC4-220ENST00000488017 LY6G6EA0A0G2JKS1 128 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 TRIM75PA6NK02 468 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 POC1B-GALNT4F8VUJ3 575 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 K7ESF4 209 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 ENPP3O14638 875 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 PPM1DO15297 605 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 GNAI3P08754 354 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 ATP5F1P24539 256 aaPredicted RBP4.45□□□□□ -1.7
SMC4-220ENST00000488017 SLC16A1P53985 500 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 ERVK-21P61565 698 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 GNAI1P63096 354 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 CERKLQ49MI3 558 aaPredicted RBP4.45□□□□□ -1.7
SMC4-220ENST00000488017 SFRP4Q6FHJ7 346 aaPredicted RBP4.45□□□□□ -1.7
SMC4-220ENST00000488017 SHC4Q6S5L8 630 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 JAZF1Q86VZ6 243 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 AMOTL1Q8IY63 956 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 GALNT4Q8N4A0 578 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 AFAP1L2Q8N4X5 818 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 UBR7Q8N806 425 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 RP9Q8TA86 221 aaKnown RBP4.45□□□□□ -1.7
SMC4-220ENST00000488017 CYP2W1Q8TAV3 490 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 CLPTM1LQ96KA5 538 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 GNL3LQ9NVN8 582 aaKnown RBP4.45□□□□□ -1.7
SMC4-220ENST00000488017 ADAMTS5Q9UNA0 930 aa4.45□□□□□ -1.7
SMC4-220ENST00000488017 ZNF785A8K8V0 405 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 GJB1P08034 283 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 PDHA1P08559 390 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 IL6RP08887 468 aaPredicted RBP4.44□□□□□ -1.7
SMC4-220ENST00000488017 CHRM5P08912 532 aaPredicted RBP4.44□□□□□ -1.7
SMC4-220ENST00000488017 NPSP0C0P6 89 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 CPEP16870 476 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 ENGP17813 658 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 IL1R2P27930 398 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 LIPAP38571 399 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 GYS2P54840 703 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 PSMC1P62191 440 aaKnown RBP4.44□□□□□ -1.7
SMC4-220ENST00000488017 PARS2Q7L3T8 475 aaKnown RBP4.44□□□□□ -1.7
SMC4-220ENST00000488017 MAVSQ7Z434 540 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 DAZAP1Q96EP5 407 aaKnown RBP4.44□□□□□ -1.7
SMC4-220ENST00000488017 DRC1Q96MC2 740 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 DMRTA2Q96SC8 542 aa4.44□□□□□ -1.7
SMC4-220ENST00000488017 SCAF8Q9UPN6 1271 aaKnown RBP4.44□□□□□ -1.7
SMC4-220ENST00000488017 FAM90A8PA6NJQ4 464 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 F2RL2O00254 374 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 NDUFS2O75306 463 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 USP1O94782 785 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 RPLP2P05387 115 aaKnown RBP4.43□□□□□ -1.7
SMC4-220ENST00000488017 FAM90A13PP0C7W8 464 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 FAM90A24PP0C7X0 464 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 GCLCP48506 637 aaPredicted RBP4.43□□□□□ -1.7
SMC4-220ENST00000488017 TOB1P50616 345 aaPredicted RBP4.43□□□□□ -1.7
SMC4-220ENST00000488017 ZNF135P52742 658 aaPredicted RBP4.43□□□□□ -1.7
SMC4-220ENST00000488017 RBMS2Q15434 407 aaKnown RBP4.43□□□□□ -1.7
SMC4-220ENST00000488017 TREML2Q5T2D2 321 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 ICE2Q659A1 982 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 MACROD1Q9BQ69 325 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 TINAGL1Q9GZM7 467 aaPredicted RBP4.43□□□□□ -1.7
SMC4-220ENST00000488017 KLHL13Q9P2N7 655 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 IPPQ9Y573 584 aa4.43□□□□□ -1.7
SMC4-220ENST00000488017 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 CD8B2A6NJW9 211 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 FCHO1O14526 889 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 GPR39O43194 453 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 TJP3O95049 919 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 EYA4O95677 639 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 ALPLP05186 524 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 CHRM3P20309 590 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 MALP21145 153 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 ERV3-1Q14264 604 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 MEX3CQ5U5Q3 659 aaKnown RBP4.42□□□□□ -1.7
SMC4-220ENST00000488017 ZNF813Q6ZN06 617 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 C9orf47Q6ZRZ4 202 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 PPP1R32Q7Z5V6 425 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 SPATS2Q86XZ4 545 aaKnown RBP4.42□□□□□ -1.7
SMC4-220ENST00000488017 KRT78Q8N1N4 520 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 ACRBPQ8NEB7 543 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 CUL5Q93034 780 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 PPP1R10Q96QC0 940 aaKnown RBP4.42□□□□□ -1.7
SMC4-220ENST00000488017 MRPS18AQ9NVS2 196 aaKnown RBP4.42□□□□□ -1.7
SMC4-220ENST00000488017 TUBD1Q9UJT1 453 aa4.42□□□□□ -1.7
SMC4-220ENST00000488017 UBE2Q2LH0YL09 131 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 DSCR3O14972 297 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 HTRA2O43464 458 aaPredicted RBP4.41□□□□□ -1.7
SMC4-220ENST00000488017 KRT86O43790 486 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 RARBP10826 455 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 CYP2A6P11509 494 aaPredicted RBP4.41□□□□□ -1.7
SMC4-220ENST00000488017 PRF1P14222 555 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 CLCN2P51788 898 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 NANOS2P60321 138 aaKnown RBP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms