RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 PI4KAP42356 2102 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 LAD1O00515 517 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 HNRNPDLO14979 420 aaKnown RBP16.6■□□□□ 0.25
MCF2L-228ENST00000487354 XPOTO43592 962 aaKnown RBP16.6■□□□□ 0.25
MCF2L-228ENST00000487354 PLA2G4BP0C869 781 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 DRD1P21728 446 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 LIG4P49917 911 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 ZNF252P-AS1Q0IIN9 211 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 COL9A2Q14055 689 aaPredicted RBP16.6■□□□□ 0.25
MCF2L-228ENST00000487354 ZNF268Q14587 947 aaPredicted RBP16.6■□□□□ 0.25
MCF2L-228ENST00000487354 PTPAQ15257 358 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 WSCD1Q658N2 575 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 SPPL2BQ8TCT7 592 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 C2orf15Q8WU43 125 aaKnown RBP16.6■□□□□ 0.25
MCF2L-228ENST00000487354 GATA6Q92908 595 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 BICD1Q96G01 975 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 GCNAQ96QF7 691 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 P2RY13Q9BPV8 354 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 CCSER1Q9C0I3 900 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 KIF9Q9HAQ2 790 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 TDP1Q9NUW8 608 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 KCND2Q9NZV8 630 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 ZMYM5Q9UJ78 669 aa16.6■□□□□ 0.25
MCF2L-228ENST00000487354 DSPP15924 2871 aaKnown RBP16.6■□□□□ 0.25
MCF2L-228ENST00000487354 NBEAQ8NFP9 2946 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 CEP192Q8TEP8 1941 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 TISP43B9A030 160 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 CDX4O14627 284 aaPredicted RBP16.59■□□□□ 0.25
MCF2L-228ENST00000487354 CAVIN2O95810 425 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 CHRM1P11229 460 aaPredicted RBP16.59■□□□□ 0.25
MCF2L-228ENST00000487354 DDX6P26196 483 aaKnown RBP eCLIP16.59■□□□□ 0.25
MCF2L-228ENST00000487354 AVPR1AP37288 418 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 ZNF131P52739 623 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 ATP2C1P98194 919 aaPredicted RBP16.59■□□□□ 0.25
MCF2L-228ENST00000487354 CREB5Q02930 508 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 USP4Q13107 963 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 DMC1Q14565 340 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 TMEM132DQ14C87 1099 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 ZRSR1Q15695 479 aaKnown RBP16.59■□□□□ 0.25
MCF2L-228ENST00000487354 ZNF77Q15935 545 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 KYAT1Q16773 422 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 SDHAF4Q5VUM1 108 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 PMS2CLQ68D20 193 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 DTHD1Q6ZMT9 781 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 MON1AQ86VX9 555 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 SLC22A12Q96S37 553 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 REEP2Q9BRK0 252 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 ABI2Q9NYB9 513 aaPredicted RBP16.59■□□□□ 0.25
MCF2L-228ENST00000487354 LIMCH1Q9UPQ0 1083 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 DERAQ9Y315 318 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 FASNP49327 2511 aaKnown RBP16.59■□□□□ 0.25
MCF2L-228ENST00000487354 FREM2Q5SZK8 3169 aa16.59■□□□□ 0.25
MCF2L-228ENST00000487354 ADAMTS9Q9P2N4 1935 aa16.58■□□□□ 0.25
MCF2L-228ENST00000487354 PCNX2A6NKB5 2137 aa16.58■□□□□ 0.25
MCF2L-228ENST00000487354 CACNA1EQ15878 2313 aa16.58■□□□□ 0.25
MCF2L-228ENST00000487354 PATE3B3GLJ2 98 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 CYB561D2O14569 222 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 APBB3O95704 486 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 BCKDHBP21953 392 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 PAX3P23760 479 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 BFSP1Q12934 665 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 FOXC1Q12948 553 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 GNL2Q13823 731 aaKnown RBP16.58■□□□□ 0.24
MCF2L-228ENST00000487354 KARSQ15046 597 aaKnown RBP16.58■□□□□ 0.24
MCF2L-228ENST00000487354 CCDC142Q17RM4 750 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 FBXO43Q4G163 708 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 SH3PXD2AQ5TCZ1 1133 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 SCARA3Q6AZY7 606 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 CD302Q8IX05 232 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 EFCAB13Q8IY85 973 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 FAM212AQ96EL1 285 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 PKMYT1Q99640 499 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 PYM1Q9BRP8 204 aaKnown RBP16.58■□□□□ 0.24
MCF2L-228ENST00000487354 MSTO1Q9BUK6 570 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 ECT2Q9H8V3 914 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 SH2B1Q9NRF2 756 aaPredicted RBP16.58■□□□□ 0.24
MCF2L-228ENST00000487354 LARSQ9P2J5 1176 aaKnown RBP16.58■□□□□ 0.24
MCF2L-228ENST00000487354 KCNG1Q9UIX4 513 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 DSEQ9UL01 958 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 C2CD2Q9Y426 696 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 MYOFQ9NZM1 2061 aa16.58■□□□□ 0.24
MCF2L-228ENST00000487354 ITPR1Q14643 2758 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 SOBPA7XYQ1 873 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 ANKRD63C9JTQ0 380 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 H0YCG3 227 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 K7ENM7 598 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 TAF6P49848 677 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 WNT7BP56706 349 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 HMGN5P82970 282 aaKnown RBP16.57■□□□□ 0.24
MCF2L-228ENST00000487354 MTF1Q14872 753 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 PDGFRLQ15198 375 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 ELF2Q15723 593 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 GAB4Q2WGN9 574 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 EML3Q32P44 896 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 RASSF3Q86WH2 238 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 OSCP1Q8WVF1 389 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 ADAM33Q9BZ11 813 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 IKZF4Q9H2S9 585 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 ODF2LQ9ULJ1 636 aa16.57■□□□□ 0.24
MCF2L-228ENST00000487354 INVSQ9Y283 1065 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms