RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CXXC1Q9P0U4 656 aaPredicted RBP15.07■□□□□ 0
CUX1-209ENST00000487284 CNOT8Q9UFF9 292 aaKnown RBP15.07■□□□□ 0
CUX1-209ENST00000487284 PACSIN2Q9UNF0 486 aaPredicted RBP15.07■□□□□ 0
CUX1-209ENST00000487284 TNRC18O15417 2968 aaPredicted RBP15.07■□□□□ 0
CUX1-209ENST00000487284 LRPAP1P30533 357 aa15.07■□□□□ 0
CUX1-209ENST00000487284 CXCR5P32302 372 aa15.07■□□□□ 0
CUX1-209ENST00000487284 CDH8P55286 799 aa15.07■□□□□ 0
CUX1-209ENST00000487284 TNNC1P63316 161 aa15.07■□□□□ 0
CUX1-209ENST00000487284 TUSC3Q13454 348 aa15.07■□□□□ 0
CUX1-209ENST00000487284 ZNF394Q53GI3 561 aa15.07■□□□□ 0
CUX1-209ENST00000487284 ZNF280BQ86YH2 543 aa15.07■□□□□ 0
CUX1-209ENST00000487284 PASD1Q8IV76 773 aa15.07■□□□□ 0
CUX1-209ENST00000487284 GPR161Q8N6U8 529 aaKnown RBP15.07■□□□□ 0
CUX1-209ENST00000487284 ZNF564Q8TBZ8 553 aaPredicted RBP15.07■□□□□ 0
CUX1-209ENST00000487284 PSMB7Q99436 277 aa15.07■□□□□ 0
CUX1-209ENST00000487284 NUP85Q9BW27 656 aa15.07■□□□□ 0
CUX1-209ENST00000487284 HCSTQ9UBK5 93 aa15.07■□□□□ 0
CUX1-209ENST00000487284 AMFRQ9UKV5 643 aa15.07■□□□□ 0
CUX1-209ENST00000487284 TBKBP1A7MCY6 615 aa15.06■□□□□ 0
CUX1-209ENST00000487284 PIRO00625 290 aa15.06■□□□□ 0
CUX1-209ENST00000487284 DGKIO75912 1065 aa15.06■□□□□ 0
CUX1-209ENST00000487284 DDHD2O94830 711 aa15.06■□□□□ 0
CUX1-209ENST00000487284 IGFBP6P24592 240 aaPredicted RBP15.06■□□□□ 0
CUX1-209ENST00000487284 CLCNKBP51801 687 aa15.06■□□□□ 0
CUX1-209ENST00000487284 RNASELQ05823 741 aaKnown RBP15.06■□□□□ 0
CUX1-209ENST00000487284 C1QBPQ07021 282 aaKnown RBP15.06■□□□□ 0
CUX1-209ENST00000487284 PTP4A2Q12974 167 aa15.06■□□□□ 0
CUX1-209ENST00000487284 PAN2Q504Q3 1202 aaKnown RBP15.06■□□□□ 0
CUX1-209ENST00000487284 SLC4A11Q8NBS3 891 aa15.06■□□□□ 0
CUX1-209ENST00000487284 PBKQ96KB5 322 aa15.06■□□□□ 0
CUX1-209ENST00000487284 ZNF518BQ9C0D4 1074 aa15.06■□□□□ 0
CUX1-209ENST00000487284 ELOVL4Q9GZR5 314 aa15.06■□□□□ 0
CUX1-209ENST00000487284 KANSL3Q9P2N6 904 aa15.06■□□□□ 0
CUX1-209ENST00000487284 HMGXB4Q9UGU5 601 aa15.06■□□□□ 0
CUX1-209ENST00000487284 BARX2Q9UMQ3 279 aaPredicted RBP15.06■□□□□ 0
CUX1-209ENST00000487284 TSC2P49815 1807 aa15.06■□□□□ 0
CUX1-209ENST00000487284 RANBP2P49792 3224 aaKnown RBP15.05■□□□□ 0
CUX1-209ENST00000487284 MED7O43513 233 aa15.05■□□□□ -0
CUX1-209ENST00000487284 RRM1P23921 792 aa15.05■□□□□ -0
CUX1-209ENST00000487284 MAGEA10P43363 369 aaPredicted RBP15.05■□□□□ -0
CUX1-209ENST00000487284 DSC1Q08554 894 aa15.05■□□□□ -0
CUX1-209ENST00000487284 LIN9Q5TKA1 542 aa15.05■□□□□ -0
CUX1-209ENST00000487284 NOA1Q8NC60 698 aaKnown RBP15.05■□□□□ -0
CUX1-209ENST00000487284 TMEM35BQ8NCS4 154 aa15.05■□□□□ -0
CUX1-209ENST00000487284 C3orf58Q8NDZ4 430 aa15.05■□□□□ -0
CUX1-209ENST00000487284 HERVK_113Q902F9 699 aa15.05■□□□□ -0
CUX1-209ENST00000487284 TWNKQ96RR1 684 aa15.05■□□□□ -0
CUX1-209ENST00000487284 MRPL9Q9BYD2 267 aaKnown RBP15.05■□□□□ -0
CUX1-209ENST00000487284 RC3H2Q9HBD1 1191 aaKnown RBP15.05■□□□□ -0
CUX1-209ENST00000487284 DNAJB4Q9UDY4 337 aa15.05■□□□□ -0
CUX1-209ENST00000487284 PODXLO00592 558 aa15.04■□□□□ -0
CUX1-209ENST00000487284 KCNK3O14649 394 aa15.04■□□□□ -0
CUX1-209ENST00000487284 CD19P15391 556 aa15.04■□□□□ -0
CUX1-209ENST00000487284 MMP8P22894 467 aa15.04■□□□□ -0
CUX1-209ENST00000487284 SSTR3P32745 418 aaPredicted RBP15.04■□□□□ -0
CUX1-209ENST00000487284 PNPLA4P41247 253 aa15.04■□□□□ -0
CUX1-209ENST00000487284 PAFAH1B1P43034 410 aa15.04■□□□□ -0
CUX1-209ENST00000487284 DNA2P51530 1060 aa15.04■□□□□ -0
CUX1-209ENST00000487284 UPP1Q16831 310 aa15.04■□□□□ -0
CUX1-209ENST00000487284 CFAP221Q4G0U5 840 aa15.04■□□□□ -0
CUX1-209ENST00000487284 CCDC181Q5TID7 509 aa15.04■□□□□ -0
CUX1-209ENST00000487284 LRRC43Q8N309 656 aa15.04■□□□□ -0
CUX1-209ENST00000487284 MSANTD4Q8NCY6 345 aa15.04■□□□□ -0
CUX1-209ENST00000487284 TMEM176AQ96HP8 235 aa15.04■□□□□ -0
CUX1-209ENST00000487284 ZNF560Q96MR9 790 aa15.04■□□□□ -0
CUX1-209ENST00000487284 FAM193BQ96PV7 902 aaPredicted RBP15.04■□□□□ -0
CUX1-209ENST00000487284 C11orf70Q9BRQ4 267 aa15.04■□□□□ -0
CUX1-209ENST00000487284 LHX5Q9H2C1 402 aa15.04■□□□□ -0
CUX1-209ENST00000487284 ADAM22Q9P0K1 906 aa15.04■□□□□ -0
CUX1-209ENST00000487284 CHORDC1Q9UHD1 332 aaPredicted RBP15.04■□□□□ -0
CUX1-209ENST00000487284 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.04■□□□□ -0
CUX1-209ENST00000487284 ALG6Q9Y672 507 aa15.04■□□□□ -0
CUX1-209ENST00000487284 MIF4GDA9UHW6 222 aaKnown RBP15.03■□□□□ -0
CUX1-209ENST00000487284 SPTLC1O15269 473 aa15.03■□□□□ -0
CUX1-209ENST00000487284 DDX3YO15523 660 aaKnown RBP15.03■□□□□ -0
CUX1-209ENST00000487284 VDRP11473 427 aa15.03■□□□□ -0
CUX1-209ENST00000487284 RPL9P32969 192 aaKnown RBP15.03■□□□□ -0
CUX1-209ENST00000487284 TAF6P49848 677 aa15.03■□□□□ -0
CUX1-209ENST00000487284 NDST1P52848 882 aa15.03■□□□□ -0
CUX1-209ENST00000487284 MESDQ14696 234 aa15.03■□□□□ -0
CUX1-209ENST00000487284 PTPROQ16827 1216 aa15.03■□□□□ -0
CUX1-209ENST00000487284 PLEKHA7Q6IQ23 1121 aa15.03■□□□□ -0
CUX1-209ENST00000487284 MMS22LQ6ZRQ5 1243 aa15.03■□□□□ -0
CUX1-209ENST00000487284 COLGALT2Q8IYK4 626 aa15.03■□□□□ -0
CUX1-209ENST00000487284 WDTC1Q8N5D0 677 aa15.03■□□□□ -0
CUX1-209ENST00000487284 C1orf131Q8NDD1 294 aaKnown RBP15.03■□□□□ -0
CUX1-209ENST00000487284 ZNF689Q96CS4 500 aaPredicted RBP15.03■□□□□ -0
CUX1-209ENST00000487284 NRDE2Q9H7Z3 1164 aa15.03■□□□□ -0
CUX1-209ENST00000487284 GDAP2Q9NXN4 497 aa15.03■□□□□ -0
CUX1-209ENST00000487284 EHD2Q9NZN4 543 aa15.03■□□□□ -0
CUX1-209ENST00000487284 KIAA1257Q9ULG3 409 aa15.03■□□□□ -0
CUX1-209ENST00000487284 CEP83Q9Y592 693 aa15.03■□□□□ -0
CUX1-209ENST00000487284 SNX9Q9Y5X1 595 aa15.03■□□□□ -0
CUX1-209ENST00000487284 SLC4A7Q9Y6M7 1214 aa15.03■□□□□ -0
CUX1-209ENST00000487284 F8W810 466 aa15.02■□□□□ -0
CUX1-209ENST00000487284 GJB5O95377 273 aa15.02■□□□□ -0
CUX1-209ENST00000487284 CALB1P05937 261 aa15.02■□□□□ -0
CUX1-209ENST00000487284 H2AFXP16104 143 aaPredicted RBP15.02■□□□□ -0
CUX1-209ENST00000487284 LILRA4P59901 499 aa15.02■□□□□ -0
CUX1-209ENST00000487284 C9orf50Q5SZB4 431 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms