RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 ETNPPLQ8TBG4 499 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 SHCBP1LQ9BZQ2 653 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 GLT8D2Q9H1C3 349 aa6.54□□□□□ -1.36
VPS13D-209ENST00000487188 ZNF804BA4D1E1 1349 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 SPDYE16A6NNV3 312 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 FAM163BP0C2L3 166 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 ALOX15P16050 662 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 SSTR1P30872 391 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 SLC25A3Q00325 362 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 PDE1BQ01064 536 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 OASLQ15646 514 aaKnown RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 HYIQ5T013 277 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 TMEM63BQ5T3F8 832 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 C3orf62Q6ZUJ4 267 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 NUDCD3Q8IVD9 361 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 NEDD1Q8NHV4 660 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 PIGBQ92521 554 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 TRIM11Q96F44 468 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 GJD4Q96KN9 370 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 NT5C1BQ96P26 610 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 CCT7Q99832 543 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 NUF2Q9BZD4 464 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 PCDH18Q9HCL0 1135 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 AGPAT3Q9NRZ7 376 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 AGTPBP1Q9UPW5 1226 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 ZNF652Q9Y2D9 606 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 ARHGEF35A5YM69 484 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 XPO1O14980 1071 aaKnown RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 EIF3DO15371 548 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 SLC26A4O43511 780 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 BANF1O75531 89 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 TRMUO75648 421 aaKnown RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 ZSCAN5DPP0CG00 497 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 SRGAP2CP0DJJ0 459 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 SRGAP2BP0DMP2 458 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 VAMP7P51809 220 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 COPAP53621 1224 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 ACAP1Q15027 740 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 MFSD4BQ5TF39 518 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 DPY19L2P1Q6NXN4 242 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 ARMCX6Q7L4S7 300 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 SLC47A2Q86VL8 602 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 WDR75Q8IWA0 830 aaKnown RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 ZNF34Q8IZ26 560 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 PDIK1LQ8N165 341 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 POU5F2Q8N7G0 328 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 C17orf50Q8WW18 174 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 RSAD2Q8WXG1 361 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 KAT5Q92993 513 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 E2F7Q96AV8 911 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 CCDC127Q96BQ5 260 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 PCDHB18PQ96TA0 734 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 ACP6Q9NPH0 428 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 KCNK4Q9NYG8 393 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 BARX2Q9UMQ3 279 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 COL5A2P05997 1499 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 DOCK2Q92608 1830 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 CAPN8A6NHC0 703 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 TYROBPO43914 113 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 NOL3O60936 208 aaKnown RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 CYP1A2P05177 515 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 NCF2P19878 526 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 SMARCA1P28370 1054 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 MORF4L2Q15014 288 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 CHI3L2Q15782 390 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 TCHHL1Q5QJ38 904 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 LGSNQ5TDP6 509 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 SYDE2Q5VT97 1194 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 KRT80Q6KB66 452 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 LPCAT2Q7L5N7 544 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 CROCCP3Q8IVE0 287 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 EPS8L1Q8TE68 723 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 APOPT1Q96IL0 206 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 FAM81BQ96LP2 452 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 STK32BQ9NY57 414 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 APOBEC2Q9Y235 224 aaKnown RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 INPP5FQ9Y2H2 1132 aa6.53□□□□□ -1.36
VPS13D-209ENST00000487188 CICQ96RK0 1608 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-209ENST00000487188 WTIPA6NIX2 430 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-209ENST00000487188 PRR5-ARHGAP8B1AHC4 643 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 TGFB1I1O43294 461 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 TGDSO95455 350 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 FAM58BPP0C7Q3 252 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 IVDP26440 423 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 RPA1P27694 616 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 CIITAP33076 1130 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 FDFT1P37268 417 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 GRIA2P42262 883 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 ESRRGP62508 458 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 DYNLT1P63172 113 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 BASP1P80723 227 aaKnown RBP6.52□□□□□ -1.37
VPS13D-209ENST00000487188 ARHGAP8P85298 464 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 PICALMQ13492 652 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 NUP93Q8N1F7 819 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 GALNT4Q8N4A0 578 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 CATSPER1Q8NEC5 780 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 GIPC3Q8TF64 312 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 ZNF384Q8TF68 577 aa6.52□□□□□ -1.37
VPS13D-209ENST00000487188 PSPC1Q8WXF1 523 aaKnown RBP6.52□□□□□ -1.37
VPS13D-209ENST00000487188 CASP10Q92851 521 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms