RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 CORO1BQ9BR76 489 aa7.53□□□□□ -1.2
VPS50-218ENST00000485994 RPP25Q9BUL9 199 aaKnown RBP7.53□□□□□ -1.2
VPS50-218ENST00000485994 DDX23Q9BUQ8 820 aaKnown RBP7.53□□□□□ -1.2
VPS50-218ENST00000485994 GTPBP4Q9BZE4 634 aaKnown RBP7.53□□□□□ -1.2
VPS50-218ENST00000485994 DNAJC25Q9H1X3 360 aa7.53□□□□□ -1.2
VPS50-218ENST00000485994 CRISPLD1Q9H336 500 aa7.53□□□□□ -1.2
VPS50-218ENST00000485994 VRTNQ9H8Y1 702 aa7.53□□□□□ -1.2
VPS50-218ENST00000485994 ABCB6Q9NP58 842 aa7.53□□□□□ -1.2
VPS50-218ENST00000485994 EXOC1Q9NV70 894 aa7.53□□□□□ -1.2
VPS50-218ENST00000485994 HCFC1R1Q9NWW0 138 aa7.53□□□□□ -1.2
VPS50-218ENST00000485994 RAPGEFL1Q9UHV5 662 aa7.53□□□□□ -1.2
VPS50-218ENST00000485994 NUMBLQ9Y6R0 609 aa7.53□□□□□ -1.2
VPS50-218ENST00000485994 FAM186AA6NE01 2351 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 ZNF638Q14966 1978 aaKnown RBP7.52□□□□□ -1.21
VPS50-218ENST00000485994 KMT2EQ8IZD2 1858 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 KRBA1A5PL33 1030 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 CLIC2O15247 247 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 TACC1O75410 805 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 PDGFBP01127 241 aaPredicted RBP7.52□□□□□ -1.21
VPS50-218ENST00000485994 RPN1P04843 607 aaKnown RBP7.52□□□□□ -1.21
VPS50-218ENST00000485994 OR4Q2P0C623 313 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 GLULP15104 373 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 PCSK1P29120 753 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 CASP1P29466 404 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 POLR2BP30876 1174 aaKnown RBP7.52□□□□□ -1.21
VPS50-218ENST00000485994 CCR2P41597 374 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 GPC5P78333 572 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 MYL7Q01449 175 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 MAPRE1Q15691 268 aaKnown RBP7.52□□□□□ -1.21
VPS50-218ENST00000485994 CFAP221Q4G0U5 840 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 SLC39A12Q504Y0 691 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 COBLL1Q53SF7 1204 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 TMC8Q8IU68 726 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 MFSD6LQ8IWD5 586 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 GRAMD1CQ8IYS0 662 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 GUF1Q8N442 669 aaKnown RBP7.52□□□□□ -1.21
VPS50-218ENST00000485994 PDCL2Q8N4E4 241 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 KIAA0895Q8NCT3 520 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 ENGASEQ8NFI3 743 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 OR5B17Q8NGF7 314 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 SPATA20Q8TB22 786 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 DEPDC1BQ8WUY9 529 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 CCDC47Q96A33 483 aaKnown RBP7.52□□□□□ -1.21
VPS50-218ENST00000485994 TCEAL4Q96EI5 215 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 MCRS1Q96EZ8 462 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 FUBP3Q96I24 572 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS50-218ENST00000485994 HPDLQ96IR7 371 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 TIGD1Q96MW7 591 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 GSDMAQ96QA5 445 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 FNBP1Q96RU3 617 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 TMEM209Q96SK2 561 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 NELL2Q99435 816 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 PKMYT1Q99640 499 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 CGRRF1Q99675 332 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 GZF1Q9H116 711 aaPredicted RBP7.52□□□□□ -1.21
VPS50-218ENST00000485994 IL21Q9HBE4 155 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 ZFP14Q9HCL3 533 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 ASAH2Q9NR71 780 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 OBP2AQ9NY56 170 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 L1RE1Q9UN81 338 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 R3HCC1Q9Y3T6 440 aaKnown RBP7.52□□□□□ -1.21
VPS50-218ENST00000485994 YIPF1Q9Y548 306 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 PCDHB5Q9Y5E4 795 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 GREB1Q4ZG55 1949 aa7.52□□□□□ -1.21
VPS50-218ENST00000485994 TSC2P49815 1807 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 NARSO43776 548 aaKnown RBP7.51□□□□□ -1.21
VPS50-218ENST00000485994 CALUO43852 315 aaPredicted RBP7.51□□□□□ -1.21
VPS50-218ENST00000485994 EXOC3O60645 756 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 C4BPAP04003 597 aaKnown RBP7.51□□□□□ -1.21
VPS50-218ENST00000485994 CSH1P0DML2 217 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 CSH2P0DML3 217 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 TNNI1P19237 187 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 WARSP23381 471 aaKnown RBP7.51□□□□□ -1.21
VPS50-218ENST00000485994 FCARP24071 287 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 CDC25CP30307 473 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 MAGEA9P43362 315 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 MAGEA11P43364 429 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 RPL10AP62906 217 aaKnown RBP7.51□□□□□ -1.21
VPS50-218ENST00000485994 TSPY1Q01534 308 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 NHLH1Q02575 133 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 TCF15Q12870 199 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 SNW1Q13573 536 aaKnown RBP7.51□□□□□ -1.21
VPS50-218ENST00000485994 SLC44A4Q53GD3 710 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 INTS6LQ5JSJ4 861 aaKnown RBP7.51□□□□□ -1.21
VPS50-218ENST00000485994 CWF19L1Q69YN2 538 aaKnown RBP7.51□□□□□ -1.21
VPS50-218ENST00000485994 SCARA3Q6AZY7 606 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 TANGO2Q6ICL3 276 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 GAREM2Q75VX8 874 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 NELFCDQ8IXH7 590 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 FMR1NBQ8N0W7 255 aaPredicted RBP7.51□□□□□ -1.21
VPS50-218ENST00000485994 RDH13Q8NBN7 331 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 SHKBP1Q8TBC3 707 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 GPR152Q8TDT2 470 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 KBTBD7Q8WVZ9 684 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 DNASE1L2Q92874 299 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 SMARCD2Q92925 531 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 FAXDC2Q96IV6 333 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 MYRFLQ96LU7 910 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 MTMR12Q9C0I1 747 aa7.51□□□□□ -1.21
VPS50-218ENST00000485994 MFSD1Q9H3U5 465 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms