RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PTPRDP23468 1912 aa13.02□□□□□ -0.32
SDC1-206ENST00000482879 MTCL1Q9Y4B5 1905 aaKnown RBP13.02□□□□□ -0.32
SDC1-206ENST00000482879 TMEM265A0A087WTH1 108 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.02□□□□□ -0.33
SDC1-206ENST00000482879 MYBPHLA2RUH7 354 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 ADAM12O43184 909 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 MFAP3LO75121 409 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 CALCAP01258 141 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 OR4Q2P0C623 313 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 CCDC172P0C7W6 258 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 VDRP11473 427 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 FERP16591 822 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 OR1D2P34982 312 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 IRS1P35568 1242 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 CREMQ03060 361 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 ASIC2Q16515 512 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 MDH1BQ5I0G3 518 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 LRRTM3Q86VH5 581 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 CNGA4Q8IV77 575 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 MRPL43Q8N983 215 aaKnown RBP13.02□□□□□ -0.33
SDC1-206ENST00000482879 C12orf29Q8N999 325 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 SYN2Q92777 582 aaPredicted RBP13.02□□□□□ -0.33
SDC1-206ENST00000482879 LRCH3Q96II8 777 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 EMILIN2Q9BXX0 1053 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 ACP6Q9NPH0 428 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 CRTAC1Q9NQ79 661 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 AIPL1Q9NZN9 384 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 FNIP2Q9P278 1114 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 GTF3C4Q9UKN8 822 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 KIAA1257Q9ULG3 409 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 PCDHGC5Q9Y5F6 944 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 IRAK3Q9Y616 596 aa13.02□□□□□ -0.33
SDC1-206ENST00000482879 LAMA3Q16787 3333 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 C2orf71A6NGG8 1288 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 HIDE1A8MVS5 230 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 TEX28O15482 410 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 THAP12O43422 761 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 CNPP09543 421 aaKnown RBP13.01□□□□□ -0.33
SDC1-206ENST00000482879 CPB1P15086 417 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 BRD2P25440 801 aaKnown RBP13.01□□□□□ -0.33
SDC1-206ENST00000482879 GNA15P30679 374 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 CDR1P51861 262 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 MAPRE1Q15691 268 aaKnown RBP13.01□□□□□ -0.33
SDC1-206ENST00000482879 PTPROQ16827 1216 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 CCDC142Q17RM4 750 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 SLC39A12Q504Y0 691 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 SGO2Q562F6 1265 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 E4F1Q66K89 784 aaPredicted RBP13.01□□□□□ -0.33
SDC1-206ENST00000482879 SLC8B1Q6J4K2 584 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 FAM171BQ6P995 826 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 IRF2BP2Q7Z5L9 587 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 SLC47A2Q86VL8 602 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 TC2NQ8N9U0 490 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 MYCBPAPQ8TBZ2 947 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 TFAP2BQ92481 460 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 CYFIP2Q96F07 1278 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 KLHL5Q96PQ7 755 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 PKMYT1Q99640 499 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 TTYH1Q9H313 450 aaPredicted RBP13.01□□□□□ -0.33
SDC1-206ENST00000482879 FAM49BQ9NUQ9 324 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 TMLHEQ9NVH6 421 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 ZNHIT6Q9NWK9 470 aaKnown RBP13.01□□□□□ -0.33
SDC1-206ENST00000482879 PRRC2BQ5JSZ5 2229 aaKnown RBP13.01□□□□□ -0.33
SDC1-206ENST00000482879 CHD9Q3L8U1 2897 aa13.01□□□□□ -0.33
SDC1-206ENST00000482879 PLXNA3P51805 1871 aa13□□□□□ -0.33
SDC1-206ENST00000482879 SKILP12757 684 aa13□□□□□ -0.33
SDC1-206ENST00000482879 CCDC130P13994 396 aa13□□□□□ -0.33
SDC1-206ENST00000482879 CYP11B1P15538 503 aa13□□□□□ -0.33
SDC1-206ENST00000482879 KLRC2P26717 231 aa13□□□□□ -0.33
SDC1-206ENST00000482879 NDUFV1P49821 464 aa13□□□□□ -0.33
SDC1-206ENST00000482879 PDE6CP51160 858 aa13□□□□□ -0.33
SDC1-206ENST00000482879 ROR1Q01973 937 aa13□□□□□ -0.33
SDC1-206ENST00000482879 CYP27A1Q02318 531 aa13□□□□□ -0.33
SDC1-206ENST00000482879 KLHL30Q0D2K2 578 aa13□□□□□ -0.33
SDC1-206ENST00000482879 GPR17Q13304 367 aa13□□□□□ -0.33
SDC1-206ENST00000482879 RAB33AQ14088 237 aa13□□□□□ -0.33
SDC1-206ENST00000482879 ARID5BQ14865 1188 aa13□□□□□ -0.33
SDC1-206ENST00000482879 NFE2Q16621 373 aaPredicted RBP13□□□□□ -0.33
SDC1-206ENST00000482879 PPP1R26Q5T8A7 1209 aaPredicted RBP13□□□□□ -0.33
SDC1-206ENST00000482879 ZNF697Q5TEC3 545 aa13□□□□□ -0.33
SDC1-206ENST00000482879 C4orf50Q6ZRC1 276 aa13□□□□□ -0.33
SDC1-206ENST00000482879 PALB2Q86YC2 1186 aa13□□□□□ -0.33
SDC1-206ENST00000482879 ZNF606Q8WXB4 792 aa13□□□□□ -0.33
SDC1-206ENST00000482879 MYLPFQ96A32 169 aa13□□□□□ -0.33
SDC1-206ENST00000482879 MRPL38Q96DV4 380 aaKnown RBP13□□□□□ -0.33
SDC1-206ENST00000482879 PCED1BQ96HM7 432 aa13□□□□□ -0.33
SDC1-206ENST00000482879 PGLYRP2Q96PD5 576 aa13□□□□□ -0.33
SDC1-206ENST00000482879 DNAJC7Q99615 494 aa13□□□□□ -0.33
SDC1-206ENST00000482879 MED10Q9BTT4 135 aa13□□□□□ -0.33
SDC1-206ENST00000482879 B3GNT5Q9BYG0 378 aa13□□□□□ -0.33
SDC1-206ENST00000482879 PRDM12Q9H4Q4 367 aa13□□□□□ -0.33
SDC1-206ENST00000482879 ABHD10Q9NUJ1 306 aa13□□□□□ -0.33
SDC1-206ENST00000482879 ATP8B3O60423 1300 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 WDR27A2RRH5 827 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 CLDN5O00501 218 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 MED7O43513 233 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 SERPING1P05155 500 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 ADH1AP07327 375 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 ADORA2BP29275 332 aa12.99□□□□□ -0.33
SDC1-206ENST00000482879 HNRNPH3P31942 346 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms