RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 ABI2Q9NYB9 513 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-213ENST00000481019 HMGXB4Q9UGU5 601 aa13.09□□□□□ -0.31
PTPRF-213ENST00000481019 MYO10Q9HD67 2058 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 PI4K2BG5E9Z4 385 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 XYLBO75191 536 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 TACC1O75410 805 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 ASS1P00966 412 aaKnown RBP13.08□□□□□ -0.32
PTPRF-213ENST00000481019 LRG1P02750 347 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 HAPLN1P10915 354 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-213ENST00000481019 GJA1P17302 382 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 CEBPBP17676 345 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 CYP2F1P24903 491 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 PIK3CAP42336 1068 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 ASPAP45381 313 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 TNNC1P63316 161 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 PAK1Q13153 545 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 ORC1Q13415 861 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 DPCR1Q3MIW9 517 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 PABPC1LQ4VXU2 614 aaKnown RBP13.08□□□□□ -0.32
PTPRF-213ENST00000481019 FAM171BQ6P995 826 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 DPH6Q7L8W6 267 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 TMC8Q8IU68 726 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 ZDHHC14Q8IZN3 488 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 TDRD5Q8NAT2 981 aaKnown RBP13.08□□□□□ -0.32
PTPRF-213ENST00000481019 GIPC2Q8TF65 315 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 SLC35C1Q96A29 364 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 SEPT5Q99719 369 aaPredicted RBP13.08□□□□□ -0.32
PTPRF-213ENST00000481019 SYT15Q9BQS2 421 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 GRPEL1Q9HAV7 217 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 TMEM8AQ9HCN3 771 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 C11orf16Q9NQ32 467 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 MAFFQ9ULX9 164 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 USTQ9Y2C2 406 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 R3HCC1Q9Y3T6 440 aaKnown RBP13.08□□□□□ -0.32
PTPRF-213ENST00000481019 NR2E1Q9Y466 385 aa13.08□□□□□ -0.32
PTPRF-213ENST00000481019 FAM86C2PA6NEL3 165 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 GBP2P32456 591 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-213ENST00000481019 GNL1P36915 607 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-213ENST00000481019 LHX1P48742 406 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 MYL7Q01449 175 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 TSPY1Q01534 308 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 ENPEPQ07075 957 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 MTMR3Q13615 1198 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 SGSM1Q2NKQ1 1148 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 DCAF17Q5H9S7 520 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-213ENST00000481019 ZNF667Q5HYK9 610 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 RTL10Q7L3V2 364 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 FILIP1Q7Z7B0 1213 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 IRF2BP1Q8IU81 584 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 NPAS3Q8IXF0 933 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 DCP1BQ8IZD4 617 aaKnown RBP13.07□□□□□ -0.32
PTPRF-213ENST00000481019 OR6B3Q8NGW1 331 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 SPATA18Q8TC71 538 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 FGF13Q92913 245 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 TATDN2Q93075 761 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 MYLPFQ96A32 169 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 CEP63Q96MT8 703 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 TWNKQ96RR1 684 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 RPP25Q9BUL9 199 aaKnown RBP13.07□□□□□ -0.32
PTPRF-213ENST00000481019 SRRTQ9BXP5 876 aaKnown RBP13.07□□□□□ -0.32
PTPRF-213ENST00000481019 TMEM30AQ9NV96 361 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 EPS15L1Q9UBC2 864 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 PTPRDP23468 1912 aa13.07□□□□□ -0.32
PTPRF-213ENST00000481019 BICDL2A1A5D9 508 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 CLDN5O00501 218 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 LAMP2P13473 410 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 PTPN2P17706 415 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 GTF2H1P32780 548 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 MXI1P50539 228 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 CACNA2D1P54289 1103 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 EPHA5P54756 1037 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 DDR2Q16832 855 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 MGAT5BQ3V5L5 792 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 MDH1BQ5I0G3 518 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 TCERG1LQ5VWI1 586 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 KRT39Q6A163 491 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 FOXR2Q6PJQ5 311 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 OTOP3Q7RTS5 596 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 DNAJB7Q7Z6W7 309 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-213ENST00000481019 GAS2L3Q86XJ1 694 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 SHKBP1Q8TBC3 707 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 ZSWIM3Q96MP5 696 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 BCO2Q9BYV7 579 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 SNX25Q9H3E2 840 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 ARMCX3Q9UH62 379 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-213ENST00000481019 RWDD2AQ9UIY3 292 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 CDH9Q9ULB4 789 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 PCDHB5Q9Y5E4 795 aa13.06□□□□□ -0.32
PTPRF-213ENST00000481019 DCXO43602 365 aa13.05□□□□□ -0.32
PTPRF-213ENST00000481019 CLSTN1O94985 981 aa13.05□□□□□ -0.32
PTPRF-213ENST00000481019 FGFR1OPO95684 399 aaKnown RBP13.05□□□□□ -0.32
PTPRF-213ENST00000481019 MYL4P12829 197 aa13.05□□□□□ -0.32
PTPRF-213ENST00000481019 HMGA1P17096 107 aaKnown RBP13.05□□□□□ -0.32
PTPRF-213ENST00000481019 PTPN1P18031 435 aaKnown RBP13.05□□□□□ -0.32
PTPRF-213ENST00000481019 PCSK1P29120 753 aa13.05□□□□□ -0.32
PTPRF-213ENST00000481019 ALDH1A3P47895 512 aa13.05□□□□□ -0.32
PTPRF-213ENST00000481019 NOP14P78316 857 aaKnown RBP13.05□□□□□ -0.32
PTPRF-213ENST00000481019 PTPN21Q16825 1174 aa13.05□□□□□ -0.32
PTPRF-213ENST00000481019 STXBP5Q5T5C0 1151 aa13.05□□□□□ -0.32
PTPRF-213ENST00000481019 PARM1Q6UWI2 310 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms