RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 LSM12Q3MHD2 195 aaKnown RBP5.1□□□□□ -1.59
VPS13A-210ENST00000471439 FMNL3Q8IVF7 1028 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.1□□□□□ -1.59
VPS13A-210ENST00000471439 UNC5BQ8IZJ1 945 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 CMTM4Q8IZR5 234 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 DPF2Q92785 391 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 ZKSCAN4Q969J2 545 aaPredicted RBP5.1□□□□□ -1.59
VPS13A-210ENST00000471439 MIEF2Q96C03 454 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 TEKT5Q96M29 485 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 OSBPL6Q9BZF3 934 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 SLC13A1Q9BZW2 595 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 PCED1AQ9H1Q7 454 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 CHPF2Q9P2E5 772 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 SRRDQ9UH36 339 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 IP6K2Q9UHH9 426 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 PRSS50Q9UI38 385 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 TUBD1Q9UJT1 453 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 SYNPO2Q9UMS6 1093 aa5.1□□□□□ -1.59
VPS13A-210ENST00000471439 PRRC2BQ5JSZ5 2229 aaKnown RBP5.09□□□□□ -1.59
VPS13A-210ENST00000471439 PLXNA1Q9UIW2 1896 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 NBEAQ8NFP9 2946 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 KLRG2A4D1S0 409 aaPredicted RBP5.09□□□□□ -1.59
VPS13A-210ENST00000471439 PRR23AA6NEV1 266 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 ERC2O15083 957 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 FAM20BO75063 409 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 TMEM127O75204 238 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 CAMTA2O94983 1202 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 HK1P19367 917 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 AGXTP21549 392 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 CTGFP29279 349 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 ALDH1B1P30837 517 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 GDF5P43026 501 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 CDK17Q00537 523 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 KIF22Q14807 665 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 MUM1Q2TAK8 710 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 KRTAP5-3Q6L8H2 238 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 TMPRSS6Q8IU80 811 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 AMOTL1Q8IY63 956 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 ARL8AQ96BM9 186 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 SORCS2Q96PQ0 1159 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 MPHOSPH9Q99550 1183 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 GPR87Q9BY21 358 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 CPEB1Q9BZB8 566 aaKnown RBP5.09□□□□□ -1.59
VPS13A-210ENST00000471439 ENKD1Q9H0I2 346 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 CDH19Q9H159 772 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 C11orf49Q9H6J7 331 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 SLC2A4RGQ9NR83 387 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 GPR45Q9Y5Y3 372 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 CDY2AQ9Y6F7 541 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 NUMBLQ9Y6R0 609 aa5.09□□□□□ -1.59
VPS13A-210ENST00000471439 PFASO15067 1338 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 A0A1W2PR48 441 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 YDJCA8MPS7 323 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 PROB1E7EW31 1015 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 MTSS1O43312 755 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 TSPAN6O43657 245 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 NPEPPSP55786 919 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 MRPS9P82933 396 aaKnown RBP5.08□□□□□ -1.6
VPS13A-210ENST00000471439 PPP2R5AQ15172 486 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 ABHD15Q6UXT9 468 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 XYLT1Q86Y38 959 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 CMTR2Q8IYT2 770 aaKnown RBP5.08□□□□□ -1.6
VPS13A-210ENST00000471439 ANKRD35Q8N283 1001 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 ATOH1Q92858 354 aaPredicted RBP5.08□□□□□ -1.6
VPS13A-210ENST00000471439 MMRN2Q9H8L6 949 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 DMRT3Q9NQL9 472 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 SERPINB13Q9UIV8 391 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 KCNG1Q9UIX4 513 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 ZNF180Q9UJW8 692 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 NOB1Q9ULX3 412 aaKnown RBP5.08□□□□□ -1.6
VPS13A-210ENST00000471439 SPEF1Q9Y4P9 236 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 TECTAO75443 2155 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 HECTD1Q9ULT8 2610 aa5.08□□□□□ -1.6
VPS13A-210ENST00000471439 KMT2EQ8IZD2 1858 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 A0A0G2JMZ2 1700 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 KLHL33A6NCF5 533 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 PRAMEF4O60810 478 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 SNUPNO95149 360 aaKnown RBP5.07□□□□□ -1.6
VPS13A-210ENST00000471439 ZSCAN20P17040 1043 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-210ENST00000471439 CCND1P24385 295 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 MAN2A2P49641 1150 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 KRT85P78386 507 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 TUBA3CQ13748 450 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 TOB2Q14106 344 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-210ENST00000471439 LRRC26Q2I0M4 334 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 TUBA3EQ6PEY2 450 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 LMBR1LQ6UX01 489 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 TPH2Q8IWU9 490 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 DNAJC10Q8IXB1 793 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 CPA6Q8N4T0 437 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 LILRA3Q8N6C8 439 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-210ENST00000471439 PPM1NQ8N819 430 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 OR14C36Q8NHC7 312 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 JPH3Q8WXH2 748 aaPredicted RBP5.07□□□□□ -1.6
VPS13A-210ENST00000471439 AUTS2Q8WXX7 1259 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 LSM14BQ9BX40 385 aaKnown RBP5.07□□□□□ -1.6
VPS13A-210ENST00000471439 WNT8AQ9H1J5 351 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 IFT122Q9HBG6 1241 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 TCEAL9Q9UHQ7 104 aa5.07□□□□□ -1.6
VPS13A-210ENST00000471439 FZD1Q9UP38 647 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms