RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-208	ENST00000470531		Q4G0T1	1027 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	DLK2	Q6UY11	383 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	FEZF2	Q8TBJ5	459 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	PGM2	Q96G03	612 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	HERPUD2	Q9BSE4	406 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	AK5	Q9Y6K8	562 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	TRPM3	Q9HCF6	1732 aa	Predicted RBP	11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	FAM237B	A0A1B0GVD1	139 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	ASAP2	O43150	1006 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	SKI	P12755	728 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	KCNA3	P22001	575 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	POLR2B	P30876	1174 aa	Known RBP	11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	CHI3L2	Q15782	390 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	TTC7B	Q86TV6	843 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	DAW1	Q8N136	415 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	NDUFAF2	Q8N183	169 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	EXT2	Q93063	718 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.22	□□□□□ -0.61
CHD3-208	ENST00000470531	MANSC1	Q9H8J5	431 aa		11.22	□□□□□ -0.61
CHD3-208	ENST00000470531		A0A0A6YYK5	440 aa	Predicted RBP	11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	GOLGA8Q	A0A0J9YX86	632 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	GOLGA8O	A6NCC3	632 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	GOLGA8N	F8WBI6	632 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	NVL	O15381	856 aa	Known RBP	11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ATP9B	O43861	1147 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ZBTB7A	O95365	584 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	PDGFRA	P16234	1089 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ADORA2B	P29275	332 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	TNFSF9	P41273	254 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ABL2	P42684	1182 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	LMNB2	Q03252	620 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	STRIP1	Q5VSL9	837 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	TTLL6	Q8N841	843 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	OR6B3	Q8NGW1	331 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	11.21	□□□□□ -0.61	2e-6	■■■■■ 29
CHD3-208	ENST00000470531	MKL1	Q969V6	931 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	PGBD4	Q96DM1	585 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	RPS6KC1	Q96S38	1066 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	TBC1D22B	Q9NU19	505 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	TSR3	Q9UJK0	312 aa	Known RBP	11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	DSG3	P32926	999 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	BCAR1	P56945	870 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	SPIRE1	Q08AE8	756 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ITIH4	Q14624	930 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ZNF667	Q5HYK9	610 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	RC3H1	Q5TC82	1133 aa	Known RBP	11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ZBTB8OS	Q8IWT0	167 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ATP11C	Q8NB49	1132 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	FBXO41	Q8TF61	875 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ZNF606	Q8WXB4	792 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	BSND	Q8WZ55	320 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	SGF29	Q96ES7	293 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	RBM41	Q96IZ5	413 aa	Known RBP	11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	FAM81B	Q96LP2	452 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	ZDHHC15	Q96MV8	337 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	RXFP1	Q9HBX9	757 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	KIAA1586	Q9HCI6	787 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	TJP2	Q9UDY2	1190 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	POLI	Q9UNA4	740 aa		11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	11.21	□□□□□ -0.61
CHD3-208	ENST00000470531	SRRM3	A6NNA2	597 aa	Predicted RBP	11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	PFDN1	O60925	122 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	CCND2	P30279	289 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	ELK3	P41970	407 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	SLC8A3	P57103	927 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	CNTN2	Q02246	1040 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	PEX6	Q13608	980 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	CUL2	Q13617	745 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	CLEC16A	Q2KHT3	1053 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	ACBD5	Q5T8D3	534 aa	Predicted RBP	11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	PRPF39	Q86UA1	669 aa	Known RBP	11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	GALNT4	Q8N4A0	578 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	MAGEC3	Q8TD91	643 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	SYTL5	Q8TDW5	730 aa	Predicted RBP	11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	FAM136A	Q96C01	138 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	TSNARE1	Q96NA8	513 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	STOML1	Q9UBI4	398 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	ZC3H7B	Q9UGR2	993 aa	Known RBP	11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	STXBP5L	Q9Y2K9	1186 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	SCIN	Q9Y6U3	715 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	SNED1	Q8TER0	1413 aa		11.21	□□□□□ -0.62
CHD3-208	ENST00000470531	ZNF189	O75820	626 aa	Predicted RBP	11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	USP1	O94782	785 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	GNAT1	P11488	350 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	LCP1	P13796	627 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	CLK2	P49760	499 aa	Known RBP	11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	GTF2A2	P52657	109 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	JAM2	P57087	298 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	CYP24A1	Q07973	514 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	NME3	Q13232	169 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	PDE1C	Q14123	709 aa	Predicted RBP	11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	LGSN	Q5TDP6	509 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	ZBTB46	Q86UZ6	589 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	RFWD2	Q8NHY2	731 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	CRAMP1	Q96RY5	1269 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	ZNF302	Q9NR11	478 aa		11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	11.2	□□□□□ -0.62
CHD3-208	ENST00000470531	IP6K2	Q9UHH9	426 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms