RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SLC27A1Q6PCB7 646 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 SYNE3Q6ZMZ3 975 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 MARCH9Q86YJ5 346 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 TMC8Q8IU68 726 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 ARID3BQ8IVW6 561 aaPredicted RBP5.82□□□□□ -1.48
PTPN4-209ENST00000469511 TCEAL8Q8IYN2 117 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 TTC9BQ8N6N2 239 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 RIN3Q8TB24 985 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 CSGALNACT1Q8TDX6 532 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 DEPDC1BQ8WUY9 529 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 BSNDQ8WZ55 320 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 HAS1Q92839 578 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 CCDC51Q96ER9 411 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 AIFM3Q96NN9 605 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 PPP1R10Q96QC0 940 aaKnown RBP5.82□□□□□ -1.48
PTPN4-209ENST00000469511 JPH2Q9BR39 696 aaPredicted RBP5.82□□□□□ -1.48
PTPN4-209ENST00000469511 LXNQ9BS40 222 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 GLT8D2Q9H1C3 349 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 DNAJC25Q9H1X3 360 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 RWDD1Q9H446 243 aaPredicted RBP5.82□□□□□ -1.48
PTPN4-209ENST00000469511 PDZD7Q9H5P4 517 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 TRPV4Q9HBA0 871 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 TMEM74BQ9NUR3 256 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 DCTN4Q9UJW0 460 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 FBXL5Q9UKA1 691 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 NAP1L2Q9ULW6 460 aaPredicted RBP5.82□□□□□ -1.48
PTPN4-209ENST00000469511 GDAQ9Y2T3 454 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 DYRK1BQ9Y463 629 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 PCDHGA5Q9Y5G8 931 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 BACE2Q9Y5Z0 518 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 LOC400499M0QZD8 3231 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 KNL1Q8NG31 2342 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 PCDH15Q96QU1 1955 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 ANAPC1Q9H1A4 1944 aa5.82□□□□□ -1.48
PTPN4-209ENST00000469511 FIGNL2A6NMB9 653 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 ZNF197O14709 1029 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 SOAT2O75908 522 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 SLITRK3O94933 977 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 P4HBP07237 508 aaKnown RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 HNRNPLP14866 589 aaKnown RBP eCLIP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 CSRP1P21291 193 aaKnown RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 GNA11P29992 359 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 ELF1P32519 619 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 EIF1AXP47813 144 aaKnown RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 EPHA5P54756 1037 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 MLLT6P55198 1093 aaPredicted RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 PPP2R5CQ13362 524 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 MRPL58Q14197 206 aaKnown RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 UPP1Q16831 310 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 INF2Q27J81 1249 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 CYP4A22Q5TCH4 519 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 DAB2IPQ5VWQ8 1189 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 GAREM2Q75VX8 874 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 SKAP1Q86WV1 359 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 RALGPS2Q86X27 583 aaPredicted RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 TEX2Q8IWB9 1127 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 ETFBKMTQ8IXQ9 262 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 C4orf19Q8IY42 314 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 YAF2Q8IY57 180 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 CEP120Q8N960 986 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 DAGLBQ8NCG7 672 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 OR2I1PQ8NGU4 316 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 MDM1Q8TC05 714 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 PIGOQ8TEQ8 1089 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 TCP11Q8WWU5 503 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 IFT43Q96FT9 208 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 LRIG1Q96JA1 1093 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 ZMAT2Q96NC0 199 aaKnown RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 PGLYRP2Q96PD5 576 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 POLR3CQ9BUI4 534 aaPredicted RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 SLC26A6Q9BXS9 759 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 IRX2Q9BZI1 471 aaPredicted RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 TPSD1Q9BZJ3 242 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 POLR3FQ9H1D9 316 aaPredicted RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 SLKQ9H2G2 1235 aaPredicted RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 C8orf33Q9H7E9 229 aaPredicted RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 NCOA5Q9HCD5 579 aaKnown RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 TMEM9BQ9NQ34 198 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 HPS4Q9NQG7 708 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 GJB4Q9NTQ9 266 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 MBD1Q9UIS9 605 aaPredicted RBP5.81□□□□□ -1.48
PTPN4-209ENST00000469511 NEUROG3Q9Y4Z2 214 aa5.81□□□□□ -1.48
PTPN4-209ENST00000469511 PLXND1Q9Y4D7 1925 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 TGFBR3LH3BV60 316 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 TMEM189-UBE2V1I3L0A0 370 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 KHNYNO15037 678 aaKnown RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 C1QL1O75973 258 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 MICAL2O94851 1124 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 ARSAP15289 507 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 RHOQP17081 205 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 LIG1P18858 919 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 MSX1P28360 303 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 GBP1P32455 592 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 MAPK8P45983 427 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 GALK1P51570 392 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 CCT2P78371 535 aaKnown RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 SIM1P81133 766 aaPredicted RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 CYP4F8P98187 520 aa5.8□□□□□ -1.48
PTPN4-209ENST00000469511 ELAVL2Q12926 359 aaKnown RBP5.8□□□□□ -1.48
PTPN4-209ENST00000469511 EPHA7Q15375 998 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms