RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 SESTD1Q86VW0 696 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 VSIG1Q86XK7 387 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 ZDHHC17Q8IUH5 632 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 RELL1Q8IUW5 271 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 PASD1Q8IV76 773 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 BBOF1Q8ND07 529 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 ART4Q93070 314 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 SCLT1Q96NL6 688 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 TMEM109Q9BVC6 243 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 NT5C1AQ9BXI3 368 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 OSBPL8Q9BZF1 889 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 TRIM7Q9C029 511 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 DCLK3Q9C098 648 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 ELOVL4Q9GZR5 314 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 SDCBP2Q9H190 292 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 CHST12Q9NRB3 414 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 GRHL1Q9NZI5 618 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 VPS18Q9P253 973 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 NXF1Q9UBU9 619 aaKnown RBP8.05□□□□□ -1.12
COL6A3-208ENST00000468792 MTRF1LQ9UGC7 380 aaKnown RBP8.05□□□□□ -1.12
COL6A3-208ENST00000468792 CHORDC1Q9UHD1 332 aaPredicted RBP8.05□□□□□ -1.12
COL6A3-208ENST00000468792 POLIQ9UNA4 740 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 NEU2Q9Y3R4 380 aa8.05□□□□□ -1.12
COL6A3-208ENST00000468792 GOLGA6CA6NDK9 693 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 ZNF487B1APH4 448 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 TNPO2O14787 897 aaKnown RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 MICAL2O94851 1124 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 TJP3O95049 919 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 NPTXRO95502 500 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 CALCAP01258 141 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 GOLGA6DP0CG33 693 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 KRT3P12035 628 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 RARGP13631 454 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 PAX3P23760 479 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 LRPAP1P30533 357 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 TAS2R40P59535 323 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 RPL7AP62424 266 aaKnown RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 ZNF252P-AS1Q0IIN9 211 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 NFX1Q12986 1120 aaKnown RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 PDCLQ13371 301 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 UAP1Q16222 522 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 HADHQ16836 314 aaKnown RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 PKDCCQ504Y2 493 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 AGBL2Q5U5Z8 902 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 AADACL2Q6P093 401 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 DENND1BQ6P3S1 775 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 ZDHHC24Q6UX98 284 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 FAM43BQ6ZT52 329 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 TMEM110Q86TL2 294 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 CDR2LQ86X02 465 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 XYLT1Q86Y38 959 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 CCDC105Q8IYK2 499 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 CRYBG2Q8N1P7 616 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 CCDC89Q8N998 374 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 FAM76AQ8TAV0 307 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 ZNF668Q96K58 619 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 GDAP1L1Q96MZ0 367 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 MTG1Q9BT17 334 aaPredicted RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 TRAIPQ9BWF2 469 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 CELF4Q9BZC1 486 aaKnown RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 NEUROG2Q9H2A3 272 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 PABPC3Q9H361 631 aaKnown RBP8.04□□□□□ -1.12
COL6A3-208ENST00000468792 SMYD3Q9H7B4 428 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 FAM204AQ9H8W3 233 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 GOLGA6AQ9NYA3 693 aa8.04□□□□□ -1.12
COL6A3-208ENST00000468792 SCN10AQ9Y5Y9 1956 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 TCRBV7S2A1N4TA0A589 114 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 GOLGA6L10A6NI86 522 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 DPYSL4O14531 572 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 TREHO43280 583 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CSDE1O75534 798 aaKnown RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 ERBB2P04626 1255 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 MYZAPP0CAP1 466 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 RALAP11233 206 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CYBAP13498 195 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CD19P15391 556 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CYP2B6P20813 491 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 IVDP26440 423 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 RFC1P35251 1148 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 RPL21P46778 160 aaKnown RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 GUCY2FP51841 1108 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 ZNF143P52747 638 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 NDST1P52848 882 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CDH8P55286 799 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 FCGRTP55899 365 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 PSMC1P62191 440 aaKnown RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 SLC25A11Q02978 314 aaKnown RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 DHX9Q08211 1270 aaKnown RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CALCOCO2Q13137 446 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 CBLBQ13191 982 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 ZNF394Q53GI3 561 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 TFDP3Q5H9I0 405 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 PRAMEF19Q5SWL8 479 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 UBXN11Q5T124 520 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 MFSD14CQ5VZR4 134 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 C9orf57Q5W0N0 161 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 RHBDF2Q6PJF5 856 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 SCARA5Q6ZMJ2 495 aa8.03□□□□□ -1.12
COL6A3-208ENST00000468792 TRMT10CQ7L0Y3 403 aaKnown RBP8.03□□□□□ -1.12
COL6A3-208ENST00000468792 RSPH3Q86UC2 560 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms