RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 PJA1Q8NG27 643 aa18.7■□□□□ 0.58
CPSF4-209ENST00000465132 SLC35C1Q96A29 364 aa18.7■□□□□ 0.58
CPSF4-209ENST00000465132 SHDQ96IW2 340 aa18.7■□□□□ 0.58
CPSF4-209ENST00000465132 FOXQ1Q9C009 403 aa18.7■□□□□ 0.58
CPSF4-209ENST00000465132 GOLGA2P5Q9HBQ8 144 aa18.7■□□□□ 0.58
CPSF4-209ENST00000465132 HCFC1R1Q9NWW0 138 aa18.7■□□□□ 0.58
CPSF4-209ENST00000465132 BACE2Q9Y5Z0 518 aa18.7■□□□□ 0.58
CPSF4-209ENST00000465132 VWA8A3KMH1 1905 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 PES1O00541 588 aaKnown RBP18.69■□□□□ 0.58
CPSF4-209ENST00000465132 CLSTN1O94985 981 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 LMNAP02545 664 aaKnown RBP18.69■□□□□ 0.58
CPSF4-209ENST00000465132 ITGB3P05106 788 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 GLULP15104 373 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 TKTP29401 623 aaKnown RBP18.69■□□□□ 0.58
CPSF4-209ENST00000465132 TAF6P49848 677 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 KCNH2Q12809 1159 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 SGSM1Q2NKQ1 1148 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 ZACNQ401N2 412 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 PABPC1LQ4VXU2 614 aaKnown RBP18.69■□□□□ 0.58
CPSF4-209ENST00000465132 WDR44Q5JSH3 913 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 C9orf57Q5W0N0 161 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 ANKS3Q6ZW76 656 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 C1orf210Q8IVY1 113 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 C3orf58Q8NDZ4 430 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 FBXL13Q8NEE6 735 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 C18orf25Q96B23 403 aaPredicted RBP18.69■□□□□ 0.58
CPSF4-209ENST00000465132 FAXDC2Q96IV6 333 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 FAM81BQ96LP2 452 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 DNMT3BQ9UBC3 853 aaKnown RBP18.69■□□□□ 0.58
CPSF4-209ENST00000465132 LIMA1Q9UHB6 759 aaKnown RBP18.69■□□□□ 0.58
CPSF4-209ENST00000465132 R4GN57 208 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 DOCK6Q96HP0 2047 aa18.69■□□□□ 0.58
CPSF4-209ENST00000465132 GTPBP10A4D1E9 387 aaKnown RBP18.68■□□□□ 0.58
CPSF4-209ENST00000465132 I3L4J1 428 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 MEFVO15553 781 aaPredicted RBP18.68■□□□□ 0.58
CPSF4-209ENST00000465132 STAU1O95793 577 aaKnown RBP18.68■□□□□ 0.58
CPSF4-209ENST00000465132 TRIM49P0CI25 452 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 TRIM49CP0CI26 452 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 PIK3CAP42336 1068 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 BRCC3P46736 316 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 GCLMP48507 274 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 FMO5P49326 533 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 DLG4P78352 724 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 MYL7Q01449 175 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 SOX4Q06945 474 aaPredicted RBP18.68■□□□□ 0.58
CPSF4-209ENST00000465132 NCAPHQ15003 741 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 VWA3BQ502W6 1294 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 SV2AQ7L0J3 742 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 IRF2BP1Q8IU81 584 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 NPAS3Q8IXF0 933 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 C1orf127Q8N9H9 656 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 KXD1Q9BQD3 176 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 NDST4Q9H3R1 872 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 TUBGCP4Q9UGJ1 667 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 DSEQ9UL01 958 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 AGAP1Q9UPQ3 857 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 GVINP1Q7Z2Y8 2422 aa18.68■□□□□ 0.58
CPSF4-209ENST00000465132 KANSL1LA0AUZ9 987 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 ANO9A1A5B4 782 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 LRRC10BA6NIK2 292 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 PIRO00625 290 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 LRRN2O75325 713 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 SERPINC1P01008 464 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 C4BPAP04003 597 aaKnown RBP18.67■□□□□ 0.58
CPSF4-209ENST00000465132 SP9P0CG40 484 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 ZNF18P17022 549 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 TRIM21P19474 475 aaKnown RBP18.67■□□□□ 0.58
CPSF4-209ENST00000465132 POLR2BP30876 1174 aaKnown RBP18.67■□□□□ 0.58
CPSF4-209ENST00000465132 NCOA4Q13772 614 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 MLF2Q15773 248 aaPredicted RBP18.67■□□□□ 0.58
CPSF4-209ENST00000465132 SLC44A4Q53GD3 710 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 SMYD5Q6GMV2 418 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 LUZP1Q86V48 1076 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 TTC39CQ8N584 583 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 OR5B17Q8NGF7 314 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 HPDLQ96IR7 371 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 DDX23Q9BUQ8 820 aaKnown RBP18.67■□□□□ 0.58
CPSF4-209ENST00000465132 FAM124BQ9H5Z6 455 aaPredicted RBP18.67■□□□□ 0.58
CPSF4-209ENST00000465132 MMRN2Q9H8L6 949 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 VPS13AQ96RL7 3174 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 SPTBN4Q9H254 2564 aa18.67■□□□□ 0.58
CPSF4-209ENST00000465132 FAM163BP0C2L3 166 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 ID4P47928 161 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 TNNC1P63316 161 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 PFKPQ01813 784 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 PRKCQQ04759 706 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 PPP3CAQ08209 521 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 TDRD10Q5VZ19 366 aaKnown RBP18.66■□□□□ 0.58
CPSF4-209ENST00000465132 LMBRD2Q68DH5 695 aaPredicted RBP18.66■□□□□ 0.58
CPSF4-209ENST00000465132 SLC8B1Q6J4K2 584 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 ZC3H14Q6PJT7 736 aaKnown RBP18.66■□□□□ 0.58
CPSF4-209ENST00000465132 DSTYKQ6XUX3 929 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 GBP6Q6ZN66 633 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 DPH6Q7L8W6 267 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 APPL2Q8NEU8 664 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 ZNF461Q8TAF7 563 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 PLEKHO2Q8TD55 490 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 ING5Q8WYH8 240 aa18.66■□□□□ 0.58
CPSF4-209ENST00000465132 OXCT2Q9BYC2 517 aaPredicted RBP18.66■□□□□ 0.58
CPSF4-209ENST00000465132 RAB20Q9NX57 234 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms