RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 LMO2P25791 158 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 PSMC1P62191 440 aaKnown RBP21.11■□□□□ 0.97
COL9A3-204ENST00000463487 INCA1Q0VD86 236 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 LRMPQ12912 555 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 DUSP4Q13115 394 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 CUL2Q13617 745 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 GPR149Q86SP6 731 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 PPM1KQ8N3J5 372 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 C12orf76Q8N812 135 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-204ENST00000463487 ELMO3Q96BJ8 720 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 APOL5Q9BWW9 433 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 NT5C1AQ9BXI3 368 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 S1PR5Q9H228 398 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 GTF3C4Q9UKN8 822 aa21.11■□□□□ 0.97
COL9A3-204ENST00000463487 USP15Q9Y4E8 981 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-204ENST00000463487 GOLGA6L19H0YKK7 550 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 RFPL2O75678 378 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 PTPN1P18031 435 aaKnown RBP21.1■□□□□ 0.97
COL9A3-204ENST00000463487 CD58P19256 250 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 NDST1P52848 882 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 EPHB3P54753 998 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 CYP27A1Q02318 531 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 CBX2Q14781 532 aaPredicted RBP21.1■□□□□ 0.97
COL9A3-204ENST00000463487 VEPH1Q14D04 833 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 MGAT5BQ3V5L5 792 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 IQCEQ6IPM2 695 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 FAM171BQ6P995 826 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 LRRTM3Q86VH5 581 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 ATAD1Q8NBU5 361 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.1■□□□□ 0.97
COL9A3-204ENST00000463487 MYCBPAPQ8TBZ2 947 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 SEPT5Q99719 369 aaPredicted RBP21.1■□□□□ 0.97
COL9A3-204ENST00000463487 SDCBP2Q9H190 292 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 CISHQ9NSE2 258 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 YIPF1Q9Y548 306 aa21.1■□□□□ 0.97
COL9A3-204ENST00000463487 GRXCR2A6NFK2 248 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 PAPLNO95428 1278 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 SEC24AO95486 1093 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 RPL10AP62906 217 aaKnown RBP21.09■□□□□ 0.97
COL9A3-204ENST00000463487 GCNT1Q02742 428 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 NCAPHQ15003 741 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 KRT31Q15323 416 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 CFAP221Q4G0U5 840 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 MDH1BQ5I0G3 518 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 MIIPQ5JXC2 388 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 ENOSF1Q7L5Y1 443 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 ITIH5Q86UX2 942 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 TATDN2Q93075 761 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 PKMYT1Q99640 499 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 TAB2Q9NYJ8 693 aa21.09■□□□□ 0.97
COL9A3-204ENST00000463487 MYBPHLA2RUH7 354 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 CCL16O15467 120 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 CILPO75339 1184 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 ZNF18P17022 549 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 TWF1Q12792 350 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 SMAD2Q15796 467 aaKnown RBP21.08■□□□□ 0.97
COL9A3-204ENST00000463487 TRIM65Q6PJ69 517 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 VSTM1Q6UX27 236 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 DHX40Q8IX18 779 aaKnown RBP21.08■□□□□ 0.97
COL9A3-204ENST00000463487 LMO3Q8TAP4 145 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 SUSD6Q92537 303 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 MYLPFQ96A32 169 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 JAKMIP2Q96AA8 810 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 ZNF512Q96ME7 567 aaPredicted RBP21.08■□□□□ 0.97
COL9A3-204ENST00000463487 CRACR2AQ9BSW2 395 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 ELOVL4Q9GZR5 314 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 TSPY26PQ9H489 355 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 CRTAC1Q9NQ79 661 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 LIMA1Q9UHB6 759 aaKnown RBP21.08■□□□□ 0.97
COL9A3-204ENST00000463487 SLC27A5Q9Y2P5 690 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 ASB3Q9Y575 518 aa21.08■□□□□ 0.97
COL9A3-204ENST00000463487 EYSQ5T1H1 3165 aa21.08■□□□□ 0.96
COL9A3-204ENST00000463487 COL6A3P12111 3177 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 HCRTO43612 131 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 ATP2C2O75185 946 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 LRRN2O75325 713 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 MFAP3P55082 362 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 TAF12Q16514 161 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 FILIP1LQ4L180 1135 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 TJAP1Q5JTD0 557 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 LRSAM1Q6UWE0 723 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 ACOT1Q86TX2 421 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 CRYBG2Q8N1P7 616 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 FAM200AQ8TCP9 573 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 PCED1BQ96HM7 432 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 MED10Q9BTT4 135 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 VPS16Q9H269 839 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 DPEP3Q9H4B8 488 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 TMLHEQ9NVH6 421 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 APEX2Q9UBZ4 518 aa21.07■□□□□ 0.96
COL9A3-204ENST00000463487 HAPLN1P10915 354 aaPredicted RBP21.06■□□□□ 0.96
COL9A3-204ENST00000463487 PTPN2P17706 415 aa21.06■□□□□ 0.96
COL9A3-204ENST00000463487 ANXA13P27216 316 aa21.06■□□□□ 0.96
COL9A3-204ENST00000463487 MAGEA11P43364 429 aa21.06■□□□□ 0.96
COL9A3-204ENST00000463487 KCNQ1P51787 676 aa21.06■□□□□ 0.96
COL9A3-204ENST00000463487 COPB1P53618 953 aaKnown RBP21.06■□□□□ 0.96
COL9A3-204ENST00000463487 SMYD5Q6GMV2 418 aa21.06■□□□□ 0.96
COL9A3-204ENST00000463487 LEMD2Q8NC56 503 aa21.06■□□□□ 0.96
COL9A3-204ENST00000463487 ZNF707Q96C28 371 aaPredicted RBP21.06■□□□□ 0.96
COL9A3-204ENST00000463487 CEP295NLQ96MC4 621 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms