RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 AMHR2Q16671 573 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 SDCCAG8Q86SQ7 713 aaPredicted RBP12.21□□□□□ -0.45
NPHP4-204ENST00000460696 CD302Q8IX05 232 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 EIF1ADQ8N9N8 165 aaKnown RBP12.21□□□□□ -0.45
NPHP4-204ENST00000460696 EXD1Q8NHP7 514 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 PPP4R1Q8TF05 950 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 TRIM55Q9BYV6 548 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 SLC40A1Q9NP59 571 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 WDR35Q9P2L0 1181 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 SAE1Q9UBE0 346 aaPredicted RBP12.21□□□□□ -0.45
NPHP4-204ENST00000460696 DNPEPQ9ULA0 475 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 ASB14A6NK59 587 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 LPXNO60711 386 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 BAG2O95816 211 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 VTNP04004 478 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 TNFSF9P41273 254 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 CTCFP49711 727 aaPredicted RBP12.21□□□□□ -0.45
NPHP4-204ENST00000460696 C1QTNF8P60827 252 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 RPL7AP62424 266 aaKnown RBP12.21□□□□□ -0.45
NPHP4-204ENST00000460696 RBP5P82980 135 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 ZACNQ401N2 412 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 METTL7BQ6UX53 244 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 PACS2Q86VP3 889 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 HACE1Q8IYU2 909 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 RASGEF1CQ8N431 466 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 DEPDC1BQ8WUY9 529 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 ASCC2Q9H1I8 757 aaPredicted RBP12.21□□□□□ -0.45
NPHP4-204ENST00000460696 PORCNQ9H237 461 aa12.21□□□□□ -0.45
NPHP4-204ENST00000460696 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.21□□□□□ -0.45
NPHP4-204ENST00000460696 CCDC195A0A1B0GUA6 201 aa12.21□□□□□ -0.46
NPHP4-204ENST00000460696 FCGRTP55899 365 aa12.21□□□□□ -0.46
NPHP4-204ENST00000460696 TFDP3Q5H9I0 405 aa12.21□□□□□ -0.46
NPHP4-204ENST00000460696 MPZL3Q6UWV2 235 aa12.21□□□□□ -0.46
NPHP4-204ENST00000460696 BEST2Q8NFU1 509 aa12.21□□□□□ -0.46
NPHP4-204ENST00000460696 WNK4Q96J92 1243 aa12.21□□□□□ -0.46
NPHP4-204ENST00000460696 SMYD2Q9NRG4 433 aa12.21□□□□□ -0.46
NPHP4-204ENST00000460696 PRMT7Q9NVM4 692 aaPredicted RBP12.21□□□□□ -0.46
NPHP4-204ENST00000460696 NAALADL1Q9UQQ1 740 aa12.21□□□□□ -0.46
NPHP4-204ENST00000460696 ATRNL1Q5VV63 1379 aa12.21□□□□□ -0.46
NPHP4-204ENST00000460696 A0A087WZ62 844 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 PPFIA2O75334 1257 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 LYPLA2O95372 231 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 CYP1A2P05177 515 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 GJB1P08034 283 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 TSNAXIP1Q2TAA8 658 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 MUM1Q2TAK8 710 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 SPOCD1Q6ZMY3 1216 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 PDZD4Q76G19 769 aaPredicted RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 CPB2Q96IY4 423 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 SH3GL2Q99962 352 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 FDXACB1Q9BRP7 624 aaPredicted RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 UBXN6Q9BZV1 441 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 POLIQ9UNA4 740 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 TRAPPC3O43617 180 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 HUS1O60921 280 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 ESRRAP11474 423 aaPredicted RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 ELNP15502 786 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 ADSSP30520 456 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 APLP1P51693 650 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 C1QBPQ07021 282 aaKnown RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 GNASQ5JWF2 1037 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 PDCD7Q8N8D1 485 aaKnown RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 HELQQ8TDG4 1101 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 KCNV2Q8TDN2 545 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 NT5C1AQ9BXI3 368 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 GPATCH2LQ9NWQ4 482 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 ANKRD36CQ5JPF3 1778 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 CFAP69A5D8W1 941 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 RPS6KA5O75582 802 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 DCTN3O75935 186 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 STAMBPO95630 424 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 ERFP50548 548 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 SP3Q02447 781 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 NME3Q13232 169 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 NFIL3Q16649 462 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 GEN1Q17RS7 908 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 ZBTB41Q5SVQ8 909 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 HEATR6Q6AI08 1181 aaKnown RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 CATSPERGQ6ZRH7 1159 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 WDR49Q8IV35 697 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 C12orf56Q8IXR9 622 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 LMNTD2Q8IXW0 634 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 DNERQ8NFT8 737 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 ERP27Q96DN0 273 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 CYTH2Q99418 400 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 NPHS2Q9NP85 383 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 AVENQ9NQS1 362 aaPredicted RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 PPARGC1AQ9UBK2 798 aaKnown RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 PCYOX1Q9UHG3 505 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 GOLGB1Q14789 3259 aaKnown RBP12.2□□□□□ -0.46
NPHP4-204ENST00000460696 PIAS1O75925 651 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 SLC25A27O95847 323 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 ETS1P14921 441 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 DRP2Q13474 957 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 SLFN11Q7Z7L1 901 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 CEP120Q8N960 986 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 CD99L2Q8TCZ2 262 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 COPS5Q92905 334 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 KLRG1Q96E93 195 aa12.2□□□□□ -0.46
NPHP4-204ENST00000460696 SGSM3Q96HU1 749 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms