RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 P4HA1P13674 534 aa21.33■■□□□ 1.01
COL9A3-202ENST00000452372 ACAT1P24752 427 aaKnown RBP21.33■■□□□ 1.01
COL9A3-202ENST00000452372 LMO2P25791 158 aa21.33■■□□□ 1.01
COL9A3-202ENST00000452372 GNL1P36915 607 aaPredicted RBP21.33■■□□□ 1.01
COL9A3-202ENST00000452372 MXI1P50539 228 aa21.33■■□□□ 1.01
COL9A3-202ENST00000452372 PTPN5P54829 565 aa21.33■■□□□ 1.01
COL9A3-202ENST00000452372 MARSP56192 900 aaKnown RBP21.33■■□□□ 1.01
COL9A3-202ENST00000452372 NFE2Q16621 373 aaPredicted RBP21.33■■□□□ 1.01
COL9A3-202ENST00000452372 INTS6LQ5JSJ4 861 aaKnown RBP21.33■■□□□ 1.01
COL9A3-202ENST00000452372 FBXL13Q8NEE6 735 aa21.33■■□□□ 1.01
COL9A3-202ENST00000452372 ACSF2Q96CM8 615 aaPredicted RBP21.33■■□□□ 1.01
COL9A3-202ENST00000452372 MRPL45Q9BRJ2 306 aaKnown RBP21.33■■□□□ 1.01
COL9A3-202ENST00000452372 IMPG2Q9BZV3 1241 aa21.33■■□□□ 1.01
COL9A3-202ENST00000452372 CRISPLD1Q9H336 500 aa21.33■■□□□ 1.01
COL9A3-202ENST00000452372 SNX25Q9H3E2 840 aa21.33■■□□□ 1.01
COL9A3-202ENST00000452372 KCNK12Q9HB15 430 aa21.33■■□□□ 1.01
COL9A3-202ENST00000452372 ERCC5P28715 1186 aaPredicted RBP21.32■■□□□ 1
COL9A3-202ENST00000452372 CT47A1Q5JQC4 288 aaPredicted RBP21.32■■□□□ 1
COL9A3-202ENST00000452372 CCDC183Q5T5S1 534 aa21.32■■□□□ 1
COL9A3-202ENST00000452372 GRASPQ7Z6J2 395 aaPredicted RBP21.32■■□□□ 1
COL9A3-202ENST00000452372 TMEM105Q8N8V8 129 aa21.32■■□□□ 1
COL9A3-202ENST00000452372 SPPL2BQ8TCT7 592 aa21.32■■□□□ 1
COL9A3-202ENST00000452372 ELMO3Q96BJ8 720 aa21.32■■□□□ 1
COL9A3-202ENST00000452372 PKMYT1Q99640 499 aa21.32■■□□□ 1
COL9A3-202ENST00000452372 TMLHEQ9NVH6 421 aa21.32■■□□□ 1
COL9A3-202ENST00000452372 CDH9Q9ULB4 789 aa21.32■■□□□ 1
COL9A3-202ENST00000452372 SLC27A5Q9Y2P5 690 aa21.32■■□□□ 1
COL9A3-202ENST00000452372 COQ4Q9Y3A0 265 aa21.32■■□□□ 1
COL9A3-202ENST00000452372 CLUHO75153 1309 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 HCRTO43612 131 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 CLSTN1O94985 981 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 PDGFRBP09619 1106 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 TUFMP49411 452 aaKnown RBP21.31■■□□□ 1
COL9A3-202ENST00000452372 CDH8P55286 799 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 CBWD6Q4V339 395 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 CBWD3Q5JTY5 395 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 CBWD5Q5RIA9 395 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 SPOPLQ6IQ16 392 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 FAM171BQ6P995 826 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 CCDC150Q8NCX0 1101 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 OR6B3Q8NGW1 331 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 MYADMQ96S97 322 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 SYT15Q9BQS2 421 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 PI4K2AQ9BTU6 479 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 SMYD3Q9H7B4 428 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 RAB20Q9NX57 234 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 GTF3C4Q9UKN8 822 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 YIPF1Q9Y548 306 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 PCDHB5Q9Y5E4 795 aa21.31■■□□□ 1
COL9A3-202ENST00000452372 MYO15AQ9UKN7 3530 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 DMDP11532 3685 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 NOTCH4Q99466 2003 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 MYBPHLA2RUH7 354 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 LRRN2O75325 713 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 PTPN2P17706 415 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 ALDH1A3P47895 512 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 NOP14P78316 857 aaKnown RBP21.3■■□□□ 1
COL9A3-202ENST00000452372 TWF1Q12792 350 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 PLD1Q13393 1074 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 TDGQ13569 410 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 TRIM59Q8IWR1 403 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 RSAD2Q8WXG1 361 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 SEMA4DQ92854 862 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 APOBEC3GQ9HC16 384 aaKnown RBP21.3■■□□□ 1
COL9A3-202ENST00000452372 HCFC1R1Q9NWW0 138 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 CEP72Q9P209 647 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 DNMT3BQ9UBC3 853 aaKnown RBP21.3■■□□□ 1
COL9A3-202ENST00000452372 NME7Q9Y5B8 376 aa21.3■■□□□ 1
COL9A3-202ENST00000452372 PMM2O15305 246 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 ATP2C2O75185 946 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 CCDC192P0DO97 292 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 HAPLN1P10915 354 aaPredicted RBP21.29■■□□□ 1
COL9A3-202ENST00000452372 NPR3P17342 541 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 ASPAP45381 313 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 FMO5P49326 533 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 MAPRE1Q15691 268 aaKnown RBP21.29■■□□□ 1
COL9A3-202ENST00000452372 SCARA5Q6ZMJ2 495 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 ELMOD1Q8N336 334 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 TTC9BQ8N6N2 239 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 FAXDC2Q96IV6 333 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 ZNF512Q96ME7 567 aaPredicted RBP21.29■■□□□ 1
COL9A3-202ENST00000452372 BCO2Q9BYV7 579 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 SDCBP2Q9H190 292 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 ABCB6Q9NP58 842 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 CRTAC1Q9NQ79 661 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.29■■□□□ 1
COL9A3-202ENST00000452372 ABI2Q9NYB9 513 aaPredicted RBP21.29■■□□□ 1
COL9A3-202ENST00000452372 TMEM63CQ9P1W3 806 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 EPS15L1Q9UBC2 864 aa21.29■■□□□ 1
COL9A3-202ENST00000452372 RIF1Q5UIP0 2472 aaKnown RBP21.28■■□□□ 1
COL9A3-202ENST00000452372 A8MXQ7 604 aa21.28■■□□□ 1
COL9A3-202ENST00000452372 FSHRP23945 695 aa21.28■■□□□ 1
COL9A3-202ENST00000452372 RAP1GAPP47736 663 aa21.28■■□□□ 1
COL9A3-202ENST00000452372 CDR1P51861 262 aa21.28■■□□□ 1
COL9A3-202ENST00000452372 NUBP1P53384 320 aa21.28■■□□□ 1
COL9A3-202ENST00000452372 EPHB3P54753 998 aa21.28■■□□□ 1
COL9A3-202ENST00000452372 PSMC1P62191 440 aaKnown RBP21.28■■□□□ 1
COL9A3-202ENST00000452372 NTHL1P78549 312 aa21.28■■□□□ 1
COL9A3-202ENST00000452372 TPD52L1Q16890 204 aaPredicted RBP21.28■■□□□ 1
COL9A3-202ENST00000452372 MGAT5BQ3V5L5 792 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms