RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 LRRTM3Q86VH5 581 aa18.29■□□□□ 0.52
PRPF40A-204ENST00000450303 ZNF560Q96MR9 790 aa18.29■□□□□ 0.52
PRPF40A-204ENST00000450303 MTMR12Q9C0I1 747 aa18.29■□□□□ 0.52
PRPF40A-204ENST00000450303 ZCWPW1Q9H0M4 648 aa18.29■□□□□ 0.52
PRPF40A-204ENST00000450303 TBC1D17Q9HA65 648 aa18.29■□□□□ 0.52
PRPF40A-204ENST00000450303 KIAA1586Q9HCI6 787 aa18.29■□□□□ 0.52
PRPF40A-204ENST00000450303 ASAH2Q9NR71 780 aa18.29■□□□□ 0.52
PRPF40A-204ENST00000450303 ARHGEF3Q9NR81 526 aa18.29■□□□□ 0.52
PRPF40A-204ENST00000450303 PTPRJQ12913 1337 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 TRIM49BA6NDI0 452 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 TMEM191BP0C7N4 346 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 NR2F2P24468 414 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 PNPLA4P41247 253 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 CYP2J2P51589 502 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 TEAD2Q15562 447 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 FAM78AQ5JUQ0 283 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 SLC9A9Q8IVB4 645 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 FAM114A1Q8IWE2 563 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 OR5B17Q8NGF7 314 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 CXorf38Q8TB03 319 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 TMEM174Q8WUU8 243 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 ATOH1Q92858 354 aaPredicted RBP18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 CEP63Q96MT8 703 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 PPP1R9BQ96SB3 815 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 SEPT5Q99719 369 aaPredicted RBP18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 LRRC3Q9BY71 257 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 SIX4Q9UIU6 781 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 FRMD4BQ9Y2L6 1034 aa18.28■□□□□ 0.52
PRPF40A-204ENST00000450303 EXOC3O60645 756 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 ECI2O75521 394 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 PMS1P54277 932 aaKnown RBP18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 RBP5P82980 135 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 PLD1Q13393 1074 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 GRM2Q14416 872 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 MGAT5BQ3V5L5 792 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 GPIHBP1Q8IV16 184 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 PDCL2Q8N4E4 241 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 AOPEPQ8N6M6 819 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 XXYLT1Q8NBI6 393 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 SHKBP1Q8TBC3 707 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 ANKRD36BP1Q96IX9 119 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 LPIN3Q9BQK8 851 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 SRRTQ9BXP5 876 aaKnown RBP18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 CBX8Q9HC52 389 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 ZNF334Q9HCZ1 680 aaPredicted RBP18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 TMLHEQ9NVH6 421 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 INTS13Q9NVM9 706 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 MAGEC2Q9UBF1 373 aaPredicted RBP18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 ITGA11Q9UKX5 1188 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 L1RE1Q9UN81 338 aa18.27■□□□□ 0.52
PRPF40A-204ENST00000450303 A0A1W2PRU2 124 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 HUS1O60921 280 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 MICAL2O94851 1124 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 GNA14O95837 355 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 TNNC2P02585 160 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 DCNP07585 359 aaKnown RBP18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 FCARP24071 287 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 ACAT1P24752 427 aaKnown RBP18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 VIPR2P41587 438 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 NUBP1P53384 320 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 EPHA5P54756 1037 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 SLC44A4Q53GD3 710 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 CEP135Q66GS9 1140 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 DNAJB7Q7Z6W7 309 aaPredicted RBP18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 FILIP1Q7Z7B0 1213 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 TMC8Q8IU68 726 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 LRRC52Q8N7C0 313 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 GIPC2Q8TF65 315 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 ASB16Q96NS5 453 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 DUSP9Q99956 384 aaKnown RBP18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 FOXQ1Q9C009 403 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 THAP9Q9H5L6 903 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 SLITRK6Q9H5Y7 841 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 ZFP14Q9HCL3 533 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 ABI2Q9NYB9 513 aaPredicted RBP18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 NFE2L3Q9Y4A8 694 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 SNX9Q9Y5X1 595 aa18.26■□□□□ 0.51
PRPF40A-204ENST00000450303 HCRTO43612 131 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 LRRN2O75325 713 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 EPB41P11171 864 aaKnown RBP18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 PSMC2P35998 433 aaKnown RBP18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 IQCB1Q15051 598 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 SURF1Q15526 300 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 SNRNP35Q16560 246 aaKnown RBP18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 DUOXA2Q1HG44 320 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 STXBP5Q5T5C0 1151 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 OSTM1Q86WC4 334 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 DCP1BQ8IZD4 617 aaKnown RBP18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 DTWD2Q8NBA8 298 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 LEMD2Q8NC56 503 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 ANKRD20A12PQ8NF67 263 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 ZSCAN18Q8TBC5 510 aaPredicted RBP18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 PSMG2Q969U7 264 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 ELSPBP1Q96BH3 223 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 CCDC127Q96BQ5 260 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 MKNK1Q9BUB5 465 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 DMAC2Q9NW81 257 aa18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 DDX43Q9NXZ2 648 aaKnown RBP18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 R3HCC1Q9Y3T6 440 aaKnown RBP18.25■□□□□ 0.51
PRPF40A-204ENST00000450303 MAPK13O15264 365 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms