RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 IL21Q9HBE4 155 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 ABCB6Q9NP58 842 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 AGAP1Q9UPQ3 857 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 NCANO14594 1321 aa14.31□□□□□ -0.12
HMGB3-204ENST00000448905 AXIN1O15169 862 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 KRT37O76014 449 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 CCDC192P0DO97 292 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 LHX1P48742 406 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 CDR1P51861 262 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 RBP5P82980 135 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 SRSF5Q13243 272 aaKnown RBP14.3□□□□□ -0.12
HMGB3-204ENST00000448905 ALCAMQ13740 583 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 TMEM196Q5HYL7 178 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 TXNDC8Q6A555 127 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 CRELD2Q6UXH1 353 aaPredicted RBP14.3□□□□□ -0.12
HMGB3-204ENST00000448905 FAM160A2Q8N612 972 aaPredicted RBP14.3□□□□□ -0.12
HMGB3-204ENST00000448905 LRRC52Q8N7C0 313 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 CNTNAP3BQ96NU0 1288 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 CNTNAP3Q9BZ76 1288 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 EBF3Q9H4W6 596 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 TMEM206Q9H813 350 aa14.3□□□□□ -0.12
HMGB3-204ENST00000448905 OTOGLQ3ZCN5 2332 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 TISP43B9A030 160 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 EXTL3O43909 919 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 RPP40O75818 363 aaKnown RBP14.29□□□□□ -0.12
HMGB3-204ENST00000448905 GCNT3O95395 438 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 ADRB1P08588 477 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 HMGA1P17096 107 aaKnown RBP14.29□□□□□ -0.12
HMGB3-204ENST00000448905 GARTP22102 1010 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 PCSK1P29120 753 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 ADSSP30520 456 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 MYO1EQ12965 1108 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 ZNF268Q14587 947 aaPredicted RBP14.29□□□□□ -0.12
HMGB3-204ENST00000448905 AASDHQ4L235 1098 aaPredicted RBP14.29□□□□□ -0.12
HMGB3-204ENST00000448905 PPM1JQ5JR12 505 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 L1TD1Q5T7N2 865 aaKnown RBP14.29□□□□□ -0.12
HMGB3-204ENST00000448905 CCDC73Q6ZRK6 1079 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 STXBP4Q6ZWJ1 553 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 SFR1Q86XK3 245 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 SPATA2LQ8IUW3 424 aaPredicted RBP14.29□□□□□ -0.12
HMGB3-204ENST00000448905 PDCL2Q8N4E4 241 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 SPATA18Q8TC71 538 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 GAB3Q8WWW8 586 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 USP13Q92995 863 aaPredicted RBP14.29□□□□□ -0.12
HMGB3-204ENST00000448905 EPSTI1Q96J88 318 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 CHAMP1Q96JM3 812 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 P2RY13Q9BPV8 354 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 DDX43Q9NXZ2 648 aaKnown RBP14.29□□□□□ -0.12
HMGB3-204ENST00000448905 RBAKQ9NYW8 714 aaPredicted RBP14.29□□□□□ -0.12
HMGB3-204ENST00000448905 ITGA11Q9UKX5 1188 aa14.29□□□□□ -0.12
HMGB3-204ENST00000448905 VPS37CA5D8V6 355 aaPredicted RBP14.28□□□□□ -0.12
HMGB3-204ENST00000448905 KIAA0391O15091 583 aaKnown RBP14.28□□□□□ -0.12
HMGB3-204ENST00000448905 AKAP3O75969 853 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 ITGB3P05106 788 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 KRT19P08727 400 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 USP17L7P0C7H9 530 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 IDEP14735 1019 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 POLR2BP30876 1174 aaKnown RBP14.28□□□□□ -0.12
HMGB3-204ENST00000448905 PDE6CP51160 858 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 GALK1P51570 392 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 GRIN1Q05586 938 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 DDR2Q16832 855 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 DPH6Q7L8W6 267 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 CPA6Q8N4T0 437 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 LRRC15Q8TF66 581 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 LEO1Q8WVC0 666 aaPredicted RBP14.28□□□□□ -0.12
HMGB3-204ENST00000448905 ATP2A3Q93084 1043 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 LRRC27Q9C0I9 530 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 ARRDC1-AS1Q9H2J1 176 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 DUS2Q9NX74 493 aaKnown RBP14.28□□□□□ -0.12
HMGB3-204ENST00000448905 GDAP2Q9NXN4 497 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 EHD2Q9NZN4 543 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 GTF3C4Q9UKN8 822 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 PCDHGA5Q9Y5G8 931 aa14.28□□□□□ -0.12
HMGB3-204ENST00000448905 SRPRBQ9Y5M8 271 aaKnown RBP14.28□□□□□ -0.12
HMGB3-204ENST00000448905 TRAV19A0A0A6YYK7 116 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 RHOBTB1O94844 696 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 TMEM191BP0C7N4 346 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 ZNF806P0C7X5 589 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 CYP2F1P24903 491 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 FAM160A1Q05DH4 1040 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 SURF1Q15526 300 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 MAPRE1Q15691 268 aaKnown RBP14.27□□□□□ -0.13
HMGB3-204ENST00000448905 INTS6LQ5JSJ4 861 aaKnown RBP14.27□□□□□ -0.13
HMGB3-204ENST00000448905 C4orf50Q6ZRC1 276 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 TMEM150AQ86TG1 271 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 BRSK2Q8IWQ3 736 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 EFCAB13Q8IY85 973 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 TOP6BLQ8N6T0 577 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 TTC16Q8NEE8 873 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 NOC3LQ8WTT2 800 aaKnown RBP14.27□□□□□ -0.13
HMGB3-204ENST00000448905 TRMT2BQ96GJ1 504 aaKnown RBP14.27□□□□□ -0.13
HMGB3-204ENST00000448905 FUBP3Q96I24 572 aaKnown RBP eCLIP14.27□□□□□ -0.13
HMGB3-204ENST00000448905 ANKRD36BP1Q96IX9 119 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 MYRFLQ96LU7 910 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 STRA6Q9BX79 667 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 TRPC7Q9HCX4 862 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 OLFML3Q9NRN5 406 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 TMLHEQ9NVH6 421 aa14.27□□□□□ -0.13
HMGB3-204ENST00000448905 TBC1D7Q9P0N9 293 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms