RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 DMP1Q13316 513 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 ORC1Q13415 861 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 GTF2H3Q13889 308 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 TCEA2Q15560 299 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 DIXDC1Q155Q3 683 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 RBBP7Q16576 425 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 C10orf76Q5T2E6 689 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 LCE2AQ5TA79 106 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 UNQ9370/PRO34162Q6UXP9 181 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 RBM44Q6ZP01 1051 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC24A5Q71RS6 500 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 GPR149Q86SP6 731 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CATSPER3Q86XQ3 398 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 KIF18BQ86Y91 864 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 DRC7Q8IY82 874 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM186BQ8IYM0 893 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PHACTR4Q8IZ21 702 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CACNA2D3Q8IZS8 1091 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 RAB42Q8N4Z0 105 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 GADD45GIP1Q8TAE8 222 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 MYCBPAPQ8TBZ2 947 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 RLN3Q8WXF3 142 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CLIP3Q96DZ5 547 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 GBP5Q96PP8 586 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SNX25Q9H3E2 840 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PAK6Q9NQU5 681 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SEC31BQ9NQW1 1179 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 TLR8Q9NR97 1041 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SAMSN1Q9NSI8 373 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 KLK13Q9UKR3 277 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 DUSP12Q9UNI6 340 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 YBX2Q9Y2T7 364 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC4A4Q9Y6R1 1079 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 DDX49Q9Y6V7 483 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 BCORL1Q5H9F3 1711 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 LRP5O75197 1615 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 KIF13AQ9H1H9 1805 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CLUHO75153 1309 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 E2F8A0AVK6 867 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SPTLC2O15270 562 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 IPO13O94829 963 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 KLF8O95600 359 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 NEFLP07196 543 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 NCAM1P13591 858 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SNRPBP14678 240 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 MUTP22033 750 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 TM4SF1P30408 202 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 KCNJ2P63252 427 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 GOLGA7BQ2TAP0 167 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 XKR9Q5GH70 373 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 NFRKBQ6P4R8 1299 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 TIPARPQ7Z3E1 657 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 RALGPS2Q86X27 583 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 TMEM105Q8N8V8 129 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 ATP11CQ8NB49 1132 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 DDI1Q8WTU0 396 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SKA2Q8WVK7 121 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 METTL21AQ8WXB1 218 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM111AQ96PZ2 611 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PHOX2BQ99453 314 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 MTA3Q9BTC8 594 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 NOC4LQ9BVI4 516 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 BICC1Q9H694 974 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC38A7Q9NVC3 462 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SPASTQ9UBP0 616 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 KCNS2Q9ULS6 477 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PCDHB10Q9UN67 800 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 DNM3Q9UQ16 869 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 NHSL1Q5SYE7 1610 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CHD4Q14839 1912 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 MROH5Q6ZUA9 1318 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC187A0A096LP49 1063 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM90A27PA6NNH2 459 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PDZK1P1A8MUH7 402 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 RASGRF2O14827 1237 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 LDB2O43679 373 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CSO75390 466 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 MATN4O95460 622 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 VCLP18206 1134 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 UGT1A1P22309 533 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 GABRR2P28476 465 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ARL1P40616 181 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 IL9RQ01113 521 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 CAP1Q01518 475 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TARDBPQ13148 414 aaKnown RBP eCLIP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 TMEM266Q2M3C6 531 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PLA2G4EQ3MJ16 856 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 NOMO2Q5JPE7 1267 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ANKRD20A2Q5SQ80 823 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 ANKRD20A3Q5VUR7 823 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PPP1R3FQ6ZSY5 799 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 RRAGAQ7L523 313 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PATL1Q86TB9 770 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 PIM3Q86V86 326 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 VSIG10LQ86VR7 867 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 NLRP10Q86W26 655 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 APCDD1Q8J025 514 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 BPIFB2Q8N4F0 458 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 HORMAD2Q8N7B1 307 aa2.92□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAJB14Q8TBM8 379 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms