RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CDH6P55285 790 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 YWHAGP61981 247 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS54-203ENST00000409558 TFDP1Q14186 410 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 TUBB8Q3ZCM7 444 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 ANKRD20A8PQ5CZ79 823 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 BRSK2Q8IWQ3 736 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 ATXN2LQ8WWM7 1075 aaKnown RBP14.1□□□□□ -0.15
VPS54-203ENST00000409558 CFAP36Q96G28 342 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 B3GNT5Q9BYG0 378 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 STAG3L1P0CL83 205 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 MMP8P22894 467 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 IVDP26440 423 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 C15orf39Q6ZRI6 1047 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 PRCCQ92733 491 aaPredicted RBP14.1□□□□□ -0.15
VPS54-203ENST00000409558 TRIM11Q96F44 468 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 KLC4Q9NSK0 619 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 SNX9Q9Y5X1 595 aa14.1□□□□□ -0.15
VPS54-203ENST00000409558 ITGBL1O95965 494 aaPredicted RBP14.09□□□□□ -0.15
VPS54-203ENST00000409558 PRAMEF19Q5SWL8 479 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 DARS2Q6PI48 645 aaKnown RBP14.09□□□□□ -0.15
VPS54-203ENST00000409558 PALM2Q8IXS6 379 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 NDRG1Q92597 394 aaKnown RBP14.09□□□□□ -0.15
VPS54-203ENST00000409558 ADPGKQ9BRR6 497 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 SDCBP2Q9H190 292 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 CDT1Q9H211 546 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 MAPK13O15264 365 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 SLC1A1P43005 524 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 CTCFP49711 727 aaPredicted RBP14.09□□□□□ -0.15
VPS54-203ENST00000409558 SGSM1Q2NKQ1 1148 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 PPP1R21Q6ZMI0 780 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 ACOT1Q86TX2 421 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 SCUBE3Q8IX30 993 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 CCDC63Q8NA47 563 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 OPTNQ96CV9 577 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS54-203ENST00000409558 A8MUI8 341 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 F7P08709 466 aaPredicted RBP14.09□□□□□ -0.15
VPS54-203ENST00000409558 ATXN1P54253 815 aaKnown RBP14.09□□□□□ -0.15
VPS54-203ENST00000409558 CCDC142Q17RM4 750 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 UNC45BQ8IWX7 931 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 PYROXD1Q8WU10 500 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 CFAP57Q96MR6 1250 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 GPR20Q99678 358 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS54-203ENST00000409558 KIAA1217Q5T5P2 1943 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 TMEM191CA6NGB0 347 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 NPTXRO95502 500 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 ADORA2BP29275 332 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 HADHBP55084 474 aaKnown RBP14.09□□□□□ -0.15
VPS54-203ENST00000409558 SNRPFP62306 86 aaKnown RBP14.09□□□□□ -0.15
VPS54-203ENST00000409558 XRRA1Q6P2D8 792 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 VSTM1Q6UX27 236 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 CHST13Q8NET6 341 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 MORC4Q8TE76 937 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 PGM2Q96G03 612 aa14.09□□□□□ -0.15
VPS54-203ENST00000409558 STMN4Q9H169 189 aaPredicted RBP14.09□□□□□ -0.15
VPS54-203ENST00000409558 LIASO43766 372 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 MAFO75444 373 aaPredicted RBP14.08□□□□□ -0.16
VPS54-203ENST00000409558 RNF8O76064 485 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 ERBB2P04626 1255 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 KCNJ2P63252 427 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 C1orf127Q8N9H9 656 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 KIF12Q96FN5 646 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 PITPNM3Q9BZ71 974 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 L3MBTL1Q9Y468 752 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 AKAP5P24588 427 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 DRG2P55039 364 aaKnown RBP14.08□□□□□ -0.16
VPS54-203ENST00000409558 CLUL1Q15846 466 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 PLEKHA7Q6IQ23 1121 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 C3orf62Q6ZUJ4 267 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 SPATA18Q8TC71 538 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 FAM81BQ96LP2 452 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 WHRNQ9P202 907 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 MAD1L1Q9Y6D9 718 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 POLR2AP24928 1970 aaKnown RBP14.08□□□□□ -0.16
VPS54-203ENST00000409558 CCT8L1PA6NM43 557 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 PPEF2O14830 753 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 MYBL1P10243 752 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 RBP3P10745 1247 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 PDGFRAP16234 1089 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 CDC25CP30307 473 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 PTK6Q13882 451 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 KRT81Q14533 505 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 CCNG2Q16589 344 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 HHATQ5VTY9 493 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 TRMT10CQ7L0Y3 403 aaKnown RBP14.08□□□□□ -0.16
VPS54-203ENST00000409558 SLC16A10Q8TF71 515 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 NFASCO94856 1347 aa14.08□□□□□ -0.16
VPS54-203ENST00000409558 MTA2O94776 668 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 RNASELQ05823 741 aaKnown RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 MSS51Q4VC12 460 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 ICE2Q659A1 982 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 OR6B3Q8NGW1 331 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 NSRP1Q9H0G5 558 aaKnown RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 TRABDQ9H4I3 376 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 AVENQ9NQS1 362 aaPredicted RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.07□□□□□ -0.16
VPS54-203ENST00000409558 HOXC6P09630 235 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 KRT4P19013 534 aa14.07□□□□□ -0.16
VPS54-203ENST00000409558 MIPP30301 263 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms