RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 KLRC3Q07444 240 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TRIP4Q15650 581 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ZCWPW2Q504Y3 356 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 SNRNP48Q6IEG0 339 aaKnown RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 SDE2Q6IQ49 451 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ZNF746Q6NUN9 644 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 BNC2Q6ZN30 1099 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 YTHDF3Q7Z739 585 aaKnown RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 GPIHBP1Q8IV16 184 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ULK2Q8IYT8 1036 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 KRT78Q8N1N4 520 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 SLC7A14Q8TBB6 771 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 KIF12Q96FN5 646 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ZSWIM1Q9BR11 485 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 MTMR12Q9C0I1 747 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 STN1Q9H668 368 aaKnown RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TASP1Q9H6P5 420 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 NOD2Q9HC29 1040 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TMCC3Q9ULS5 477 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 MINPP1Q9UNW1 487 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 DLC1Q96QB1 1528 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 UBA6A0AVT1 1052 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TRIM49BA6NDI0 452 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TALDO1P37837 337 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 STAT5BP51692 787 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 NCALDP61601 193 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 BNC1Q01954 994 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 NCOA4Q13772 614 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CEP78Q5JTW2 689 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 KLHDC7AQ5VTJ3 777 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 FOXR2Q6PJQ5 311 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ADGRF4Q8IZF3 695 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TC2NQ8N9U0 490 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 PIGOQ8TEQ8 1089 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 GANCQ8TET4 914 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CASP10Q92851 521 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 KCNB2Q92953 911 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 MMP19Q99542 508 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 SLC13A1Q9BZW2 595 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 DMAP1Q9NPF5 467 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 RAB6BQ9NRW1 208 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 IMPAD1Q9NX62 359 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 KLHL3Q9UH77 587 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 POLG2Q9UHN1 485 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ACTL7BQ9Y614 415 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 NRKQ7Z2Y5 1582 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CYP2D7A0A087X1C5 515 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 SRGAP2O75044 1071 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 FBXW4P57775 412 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 XIAPP98170 497 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 MSLNQ13421 630 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ARHGEF7Q14155 803 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 SF3B3Q15393 1217 aaKnown RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CCNG2Q16589 344 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 RBM43Q6ZSC3 357 aaKnown RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CYB5R4Q7L1T6 521 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CATSPER3Q86XQ3 398 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 FBXL16Q8N461 479 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 EXD1Q8NHP7 514 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CENPTQ96BT3 561 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TRAPPC9Q96Q05 1148 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TEX13BQ9BXU2 312 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CYP4F11Q9HBI6 524 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TMBIM4Q9HC24 238 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CACNA2D2Q9NY47 1150 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 COL15A1P39059 1388 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TMEM191CA6NGB0 347 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 PDZK1P1A8MUH7 402 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 H7C4K7 107 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 NPTXRO95502 500 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 GH1P01241 217 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 TGM2P21980 687 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 PTGER2P43116 358 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ALDH18A1P54886 795 aaKnown RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 PROSER3Q2NL68 480 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 DCAF6Q58WW2 860 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 PLA2G4FQ68DD2 849 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 NEK5Q6P3R8 708 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 SPICE1Q8N0Z3 855 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ZNF483Q8TF39 744 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ELMO2Q96JJ3 720 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 CNDP1Q96KN2 507 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 RXFP1Q9HBX9 757 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 UBQLN1Q9UMX0 589 aaKnown RBP6.34□□□□□ -1.39
SCN1A-203ENST00000409050 ZNF711Q9Y462 761 aa6.34□□□□□ -1.39
SCN1A-203ENST00000409050 H3BQF6 201 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 ZSCAN9O15535 394 aaPredicted RBP6.34□□□□□ -1.4
SCN1A-203ENST00000409050 VPS26AO75436 327 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 PDE5AO76074 875 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 MYL3P08590 195 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 MAGEA10P43363 369 aaPredicted RBP6.34□□□□□ -1.4
SCN1A-203ENST00000409050 RENBPP51606 427 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 CYB5D1Q6P9G0 228 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 ERO1BQ86YB8 467 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 TMPRSS6Q8IU80 811 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 SCN4BQ8IWT1 228 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 SH3RF3Q8TEJ3 882 aaPredicted RBP6.34□□□□□ -1.4
SCN1A-203ENST00000409050 DIS3LQ8TF46 1054 aaKnown RBP6.34□□□□□ -1.4
SCN1A-203ENST00000409050 INPP5DQ92835 1189 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 KLHL4Q9C0H6 718 aa6.34□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms