RNA–Protein interactions for RNA: ENST00000405578.8

RPAIN-204, Transcript of RPA interacting protein, humanhuman

TSL 2 BASIC

Gene RPAIN, Length 1,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-204ENST00000405578 CTSAP10619 480 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 TRIM21P19474 475 aaKnown RBP11.3□□□□□ -0.6
RPAIN-204ENST00000405578 BRCC3P46736 316 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 GLUD2P49448 558 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 FILIP1LQ4L180 1135 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 VWA3BQ502W6 1294 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 HSP90AA4PQ58FG1 418 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 ZNF667Q5HYK9 610 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 C1orf220Q5T0J3 134 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 FKBP15Q5T1M5 1219 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 CDKAL1Q5VV42 579 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 ANKS3Q6ZW76 656 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 DPH6Q7L8W6 267 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 IRF2BP1Q8IU81 584 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 C1orf210Q8IVY1 113 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 THEM5Q8N1Q8 247 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 C3orf58Q8NDZ4 430 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 TAS1R2Q8TE23 839 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 BCL7CQ8WUZ0 217 aaPredicted RBP11.3□□□□□ -0.6
RPAIN-204ENST00000405578 SENP8Q96LD8 212 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 MMS19Q96T76 1030 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 EMILIN2Q9BXX0 1053 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 GPR62Q9BZJ7 368 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 CBX8Q9HC52 389 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.3□□□□□ -0.6
RPAIN-204ENST00000405578 RAB20Q9NX57 234 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 GDAP2Q9NXN4 497 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 DLGAP2Q9P1A6 1054 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 SIX4Q9UIU6 781 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 PCDHB8Q9UN66 801 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 SNX9Q9Y5X1 595 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 DOCK6Q96HP0 2047 aa11.3□□□□□ -0.6
RPAIN-204ENST00000405578 F8W810 466 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 M0QZQ0 153 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 PPEF2O14830 753 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 ASS1P00966 412 aaKnown RBP11.29□□□□□ -0.6
RPAIN-204ENST00000405578 CST3P01034 146 aaPredicted RBP11.29□□□□□ -0.6
RPAIN-204ENST00000405578 ADRB1P08588 477 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 SRFP11831 508 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 TYMPP19971 482 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 FGFR3P22607 806 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 GBP2P32456 591 aaPredicted RBP11.29□□□□□ -0.6
RPAIN-204ENST00000405578 AARSP49588 968 aaKnown RBP eCLIP11.29□□□□□ -0.6
RPAIN-204ENST00000405578 MYL6P60660 151 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 DSG1Q02413 1049 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 YWHAHQ04917 246 aaPredicted RBP11.29□□□□□ -0.6
RPAIN-204ENST00000405578 NCAPHQ15003 741 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 WDR72Q3MJ13 1102 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 CBWD6Q4V339 395 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 CBWD3Q5JTY5 395 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 CBWD5Q5RIA9 395 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 VARS2Q5ST30 1063 aaKnown RBP11.29□□□□□ -0.6
RPAIN-204ENST00000405578 ZNF280DQ6N043 979 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 GBP6Q6ZN66 633 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 C15orf39Q6ZRI6 1047 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 DHX40Q8IX18 779 aaKnown RBP11.29□□□□□ -0.6
RPAIN-204ENST00000405578 TMEM86AQ8N2M4 240 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 TOP6BLQ8N6T0 577 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 SPATA18Q8TC71 538 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 GPR152Q8TDT2 470 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 FAXDC2Q96IV6 333 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 FOXQ1Q9C009 403 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 NDST4Q9H3R1 872 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 VRTNQ9H8Y1 702 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 ARHGEF3Q9NR81 526 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 CHST7Q9NS84 486 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 NXF1Q9UBU9 619 aaKnown RBP11.29□□□□□ -0.6
RPAIN-204ENST00000405578 SIT1Q9Y3P8 196 aa11.29□□□□□ -0.6
RPAIN-204ENST00000405578 GTPBP10A4D1E9 387 aaKnown RBP11.28□□□□□ -0.6
RPAIN-204ENST00000405578 I3L4J1 428 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 C2CD2LO14523 706 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 SPTLC1O15269 473 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 VNN1O95497 513 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 FAM163BP0C2L3 166 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 TKTP29401 623 aaKnown RBP11.28□□□□□ -0.6
RPAIN-204ENST00000405578 LHX1P48742 406 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 NOP14P78316 857 aaKnown RBP11.28□□□□□ -0.6
RPAIN-204ENST00000405578 LMNB2Q03252 620 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 IQCB1Q15051 598 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 KRT31Q15323 416 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 EXOC3L4Q17RC7 722 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 OVOS1Q6IE37 1185 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 PHLDB3Q6NSJ2 640 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 ELMSAN1Q6PJG2 1045 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 LUZP1Q86V48 1076 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 PPFIBP1Q86W92 1011 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 MAML2Q8IZL2 1156 aaPredicted RBP11.28□□□□□ -0.6
RPAIN-204ENST00000405578 TTC39CQ8N584 583 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 CXorf38Q8TB03 319 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 PIK3R5Q8WYR1 880 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 FAM84AQ96KN4 292 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 FAM81BQ96LP2 452 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 SNX25Q9H3E2 840 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 LIMA1Q9UHB6 759 aaKnown RBP11.28□□□□□ -0.6
RPAIN-204ENST00000405578 USP18Q9UMW8 372 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 COQ4Q9Y3A0 265 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 IRAK3Q9Y616 596 aa11.28□□□□□ -0.6
RPAIN-204ENST00000405578 LRRC10BA6NIK2 292 aa11.27□□□□□ -0.61
RPAIN-204ENST00000405578 PRR5-ARHGAP8B1AHC4 643 aa11.27□□□□□ -0.61
RPAIN-204ENST00000405578 LRRN2O75325 713 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms