RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 UCHL3P15374 230 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 PTPN1P18031 435 aaKnown RBP31.27■■■□□ 2.6
USP42-202ENST00000404008 RFX1P22670 979 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 SMARCB1Q12824 385 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 ADAM15Q13444 863 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 CTC1Q2NKJ3 1217 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 IQCEQ6IPM2 695 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 TMEM184AQ6ZMB5 413 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 ACOT1Q86TX2 421 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 CRYBG2Q8N1P7 616 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 MYCBPAPQ8TBZ2 947 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 PCMTD1Q96MG8 357 aaPredicted RBP31.27■■■□□ 2.6
USP42-202ENST00000404008 LPIN3Q9BQK8 851 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 ELOVL4Q9GZR5 314 aa31.27■■■□□ 2.6
USP42-202ENST00000404008 SPTBN5Q9NRC6 3674 aaKnown RBP31.26■■■□□ 2.59
USP42-202ENST00000404008 A0A1W2PQC6 194 aa31.26■■■□□ 2.59
USP42-202ENST00000404008 MTMR11A4FU01 709 aa31.26■■■□□ 2.59
USP42-202ENST00000404008 ADCY1Q08828 1119 aa31.26■■■□□ 2.59
USP42-202ENST00000404008 NFE2Q16621 373 aaPredicted RBP31.26■■■□□ 2.59
USP42-202ENST00000404008 PTPN21Q16825 1174 aa31.26■■■□□ 2.59
USP42-202ENST00000404008 NAA15Q9BXJ9 866 aaKnown RBP31.26■■■□□ 2.59
USP42-202ENST00000404008 XPO4Q9C0E2 1151 aaKnown RBP31.26■■■□□ 2.59
USP42-202ENST00000404008 MAN1C1Q9NR34 630 aa31.26■■■□□ 2.59
USP42-202ENST00000404008 MAFFQ9ULX9 164 aa31.26■■■□□ 2.59
USP42-202ENST00000404008 FHOD1Q9Y613 1164 aa31.26■■■□□ 2.59
USP42-202ENST00000404008 COL6A3P12111 3177 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 RAD23BP54727 409 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 MAPRE1Q15691 268 aaKnown RBP31.25■■■□□ 2.59
USP42-202ENST00000404008 ARHGAP44Q17R89 818 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 ZNF394Q53GI3 561 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 MDH1BQ5I0G3 518 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 SLC4A11Q8NBS3 891 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 KREMEN2Q8NCW0 462 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 C2orf15Q8WU43 125 aaKnown RBP31.25■■■□□ 2.59
USP42-202ENST00000404008 HDAC7Q8WUI4 952 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 CASP10Q92851 521 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 PLEKHA4Q9H4M7 779 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 CNTN6Q9UQ52 1028 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 PCDHB4Q9Y5E5 795 aa31.25■■■□□ 2.59
USP42-202ENST00000404008 EPHB6O15197 1021 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 CDR1P51861 262 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 TMEM270Q6UE05 265 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 NEK11Q8NG66 645 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 PPM1EQ8WY54 764 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 SHC3Q92529 594 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 PABPC5Q96DU9 382 aaKnown RBP31.24■■■□□ 2.59
USP42-202ENST00000404008 TMEM176AQ96HP8 235 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 DNAI2Q9GZS0 605 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 DPP7Q9UHL4 492 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 DAAM1Q9Y4D1 1078 aa31.24■■■□□ 2.59
USP42-202ENST00000404008 SEC24AO95486 1093 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 SRGAP2BP0DMP2 458 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 PBX1P40424 430 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 SARM1Q6SZW1 724 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 TCEAL8Q8IYN2 117 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 ATAD1Q8NBU5 361 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 SPPL2BQ8TCT7 592 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 MYLPFQ96A32 169 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 PCED1BQ96HM7 432 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 CRISPLD1Q9H336 500 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 CLDND1Q9NY35 253 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 PCDHB5Q9Y5E4 795 aa31.23■■■□□ 2.59
USP42-202ENST00000404008 CBFA2T2O43439 604 aa31.22■■■□□ 2.59
USP42-202ENST00000404008 TPM3P06753 285 aa31.22■■■□□ 2.59
USP42-202ENST00000404008 TRIM21P19474 475 aaKnown RBP31.22■■■□□ 2.59
USP42-202ENST00000404008 ZNF132P52740 706 aa31.22■■■□□ 2.59
USP42-202ENST00000404008 SMYD5Q6GMV2 418 aa31.22■■■□□ 2.59
USP42-202ENST00000404008 C4orf50Q6ZRC1 276 aa31.22■■■□□ 2.59
USP42-202ENST00000404008 C12orf29Q8N999 325 aa31.22■■■□□ 2.59
USP42-202ENST00000404008 CYP4F11Q9HBI6 524 aa31.22■■■□□ 2.59
USP42-202ENST00000404008 DZANK1Q9NVP4 752 aa31.22■■■□□ 2.59
USP42-202ENST00000404008 ABI2Q9NYB9 513 aaPredicted RBP31.22■■■□□ 2.59
USP42-202ENST00000404008 HSFX1Q9UBD0 423 aa31.22■■■□□ 2.59
USP42-202ENST00000404008 RNF225M0QZC1 329 aaPredicted RBP31.21■■■□□ 2.59
USP42-202ENST00000404008 AP5Z1O43299 807 aa31.21■■■□□ 2.59
USP42-202ENST00000404008 ELF1P32519 619 aa31.21■■■□□ 2.59
USP42-202ENST00000404008 POLR2FP61218 127 aaKnown RBP31.21■■■□□ 2.59
USP42-202ENST00000404008 CYP27A1Q02318 531 aa31.21■■■□□ 2.59
USP42-202ENST00000404008 DUSP4Q13115 394 aa31.21■■■□□ 2.59
USP42-202ENST00000404008 RAPGEF1Q13905 1077 aa31.21■■■□□ 2.59
USP42-202ENST00000404008 LIN9Q5TKA1 542 aa31.21■■■□□ 2.59
USP42-202ENST00000404008 ELMSAN1Q6PJG2 1045 aa31.21■■■□□ 2.59
USP42-202ENST00000404008 SPATA2LQ8IUW3 424 aaPredicted RBP31.21■■■□□ 2.59
USP42-202ENST00000404008 RBBP8NLQ8NC74 664 aaPredicted RBP31.21■■■□□ 2.59
USP42-202ENST00000404008 MAFAQ8NHW3 353 aaPredicted RBP31.21■■■□□ 2.59
USP42-202ENST00000404008 FUBP3Q96I24 572 aaKnown RBP eCLIP31.21■■■□□ 2.59
USP42-202ENST00000404008 GPR88Q9GZN0 384 aa31.21■■■□□ 2.59
USP42-202ENST00000404008 ABCB6Q9NP58 842 aa31.21■■■□□ 2.59
USP42-202ENST00000404008 PRRG1O14668 218 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 TBX10O75333 385 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 C8AP07357 584 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 KRT5P13647 590 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 LTBRP36941 435 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 CFAP221Q4G0U5 840 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 CCDC149Q6ZUS6 474 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 TTC9BQ8N6N2 239 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 SLC7A14Q8TBB6 771 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 HEXIM2Q96MH2 286 aaKnown RBP31.2■■■□□ 2.59
USP42-202ENST00000404008 B3GNT5Q9BYG0 378 aa31.2■■■□□ 2.59
USP42-202ENST00000404008 STK33Q9BYT3 514 aa31.2■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms