RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TMCO2Q7Z6W1 182 aaPredicted RBP15.1■□□□□ 0.01
SKA1-202ENST00000398452 NOP9Q86U38 636 aaKnown RBP15.1■□□□□ 0.01
SKA1-202ENST00000398452 ZSCAN30Q86W11 494 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 SPNS2Q8IVW8 549 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 TIFAQ96CG3 184 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 NOX5Q96PH1 765 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 HS3ST6Q96QI5 342 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 SPG21Q9NZD8 308 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 CXXC1Q9P0U4 656 aaPredicted RBP15.1■□□□□ 0.01
SKA1-202ENST00000398452 CDH9Q9ULB4 789 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 TIMM13Q9Y5L4 95 aaPredicted RBP15.1■□□□□ 0.01
SKA1-202ENST00000398452 A0A0C4DFX4 3053 aa15.1■□□□□ 0.01
SKA1-202ENST00000398452 CYP11A1P05108 521 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 BRD2P25440 801 aaKnown RBP15.09■□□□□ 0.01
SKA1-202ENST00000398452 MAGEA1P43355 309 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 SNX16P57768 344 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 HTRA4P83105 476 aaPredicted RBP15.09■□□□□ 0.01
SKA1-202ENST00000398452 GFPT1Q06210 699 aaPredicted RBP15.09■□□□□ 0.01
SKA1-202ENST00000398452 MAPRE1Q15691 268 aaKnown RBP15.09■□□□□ 0.01
SKA1-202ENST00000398452 ZNF280DQ6N043 979 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 ALKBH5Q6P6C2 394 aaKnown RBP15.09■□□□□ 0.01
SKA1-202ENST00000398452 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.09■□□□□ 0.01
SKA1-202ENST00000398452 ACOT1Q86TX2 421 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 GLYCTKQ8IVS8 523 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 SLC4A11Q8NBS3 891 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 SLC20A1Q8WUM9 679 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 ZNF606Q8WXB4 792 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 PPM1EQ8WY54 764 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 SYT15Q9BQS2 421 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 MED10Q9BTT4 135 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 OXCT2Q9BYC2 517 aaPredicted RBP15.09■□□□□ 0.01
SKA1-202ENST00000398452 ELOVL4Q9GZR5 314 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 ZNF576Q9H609 170 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 CWH43Q9H720 699 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 SPTLC3Q9NUV7 552 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 MRPL42Q9Y6G3 142 aaKnown RBP15.09■□□□□ 0.01
SKA1-202ENST00000398452 ATP8B3O60423 1300 aa15.09■□□□□ 0.01
SKA1-202ENST00000398452 B4GALT3O60512 393 aa15.08■□□□□ 0
SKA1-202ENST00000398452 LSM8O95777 96 aaKnown RBP15.08■□□□□ 0
SKA1-202ENST00000398452 ITGB1P05556 798 aa15.08■□□□□ 0
SKA1-202ENST00000398452 MMEP08473 750 aa15.08■□□□□ 0
SKA1-202ENST00000398452 NSFP46459 744 aaKnown RBP15.08■□□□□ 0
SKA1-202ENST00000398452 ORC1Q13415 861 aa15.08■□□□□ 0
SKA1-202ENST00000398452 MTF1Q14872 753 aa15.08■□□□□ 0
SKA1-202ENST00000398452 USP41Q3LFD5 358 aa15.08■□□□□ 0
SKA1-202ENST00000398452 ARHGAP29Q52LW3 1261 aa15.08■□□□□ 0
SKA1-202ENST00000398452 LIMS2Q7Z4I7 341 aa15.08■□□□□ 0
SKA1-202ENST00000398452 DCP1BQ8IZD4 617 aaKnown RBP15.08■□□□□ 0
SKA1-202ENST00000398452 CRYBG2Q8N1P7 616 aa15.08■□□□□ 0
SKA1-202ENST00000398452 COLGALT1Q8NBJ5 622 aa15.08■□□□□ 0
SKA1-202ENST00000398452 B3GALNT2Q8NCR0 500 aa15.08■□□□□ 0
SKA1-202ENST00000398452 TMEM35BQ8NCS4 154 aa15.08■□□□□ 0
SKA1-202ENST00000398452 KBTBD7Q8WVZ9 684 aa15.08■□□□□ 0
SKA1-202ENST00000398452 IGSF21Q96ID5 467 aa15.08■□□□□ 0
SKA1-202ENST00000398452 TWNKQ96RR1 684 aa15.08■□□□□ 0
SKA1-202ENST00000398452 ACBD6Q9BR61 282 aa15.08■□□□□ 0
SKA1-202ENST00000398452 DESI2Q9BSY9 194 aa15.08■□□□□ 0
SKA1-202ENST00000398452 PBX4Q9BYU1 374 aa15.08■□□□□ 0
SKA1-202ENST00000398452 TSGA10Q9BZW7 698 aa15.08■□□□□ 0
SKA1-202ENST00000398452 NOCTQ9UK39 431 aaKnown RBP15.08■□□□□ 0
SKA1-202ENST00000398452 SCN1AP35498 2009 aa15.08■□□□□ 0
SKA1-202ENST00000398452 A0A087X0T9 212 aa15.07■□□□□ 0
SKA1-202ENST00000398452 TMCO5BA8MYB1 307 aa15.07■□□□□ 0
SKA1-202ENST00000398452 M0QYV0 167 aa15.07■□□□□ 0
SKA1-202ENST00000398452 GABRDO14764 452 aa15.07■□□□□ 0
SKA1-202ENST00000398452 H2AFZP0C0S5 128 aa15.07■□□□□ 0
SKA1-202ENST00000398452 FAM228BP0C875 321 aa15.07■□□□□ 0
SKA1-202ENST00000398452 GZMAP12544 262 aa15.07■□□□□ 0
SKA1-202ENST00000398452 PTPN1P18031 435 aaKnown RBP15.07■□□□□ 0
SKA1-202ENST00000398452 ACAT1P24752 427 aaKnown RBP15.07■□□□□ 0
SKA1-202ENST00000398452 TKTP29401 623 aaKnown RBP15.07■□□□□ 0
SKA1-202ENST00000398452 PBX3P40426 434 aa15.07■□□□□ 0
SKA1-202ENST00000398452 FMO1Q01740 532 aa15.07■□□□□ 0
SKA1-202ENST00000398452 KIF5AQ12840 1032 aa15.07■□□□□ 0
SKA1-202ENST00000398452 CNGA2Q16280 664 aa15.07■□□□□ 0
SKA1-202ENST00000398452 CTXN3Q4LDR2 81 aa15.07■□□□□ 0
SKA1-202ENST00000398452 TOGARAM2Q6ZUX3 1019 aa15.07■□□□□ 0
SKA1-202ENST00000398452 ANKS3Q6ZW76 656 aa15.07■□□□□ 0
SKA1-202ENST00000398452 H2AFVQ71UI9 128 aa15.07■□□□□ 0
SKA1-202ENST00000398452 OSTM1Q86WC4 334 aa15.07■□□□□ 0
SKA1-202ENST00000398452 SLC39A11Q8N1S5 342 aa15.07■□□□□ 0
SKA1-202ENST00000398452 ACRBPQ8NEB7 543 aa15.07■□□□□ 0
SKA1-202ENST00000398452 WHAMMQ8TF30 809 aa15.07■□□□□ 0
SKA1-202ENST00000398452 CTNNBL1Q8WYA6 563 aaPredicted RBP15.07■□□□□ 0
SKA1-202ENST00000398452 CYFIP2Q96F07 1278 aa15.07■□□□□ 0
SKA1-202ENST00000398452 TRIM11Q96F44 468 aa15.07■□□□□ 0
SKA1-202ENST00000398452 TTPALQ9BTX7 342 aa15.07■□□□□ 0
SKA1-202ENST00000398452 ZNF518BQ9C0D4 1074 aa15.07■□□□□ 0
SKA1-202ENST00000398452 MIS12Q9H081 205 aa15.07■□□□□ 0
SKA1-202ENST00000398452 SYNCQ9H7C4 482 aa15.07■□□□□ 0
SKA1-202ENST00000398452 RC3H2Q9HBD1 1191 aaKnown RBP15.07■□□□□ 0
SKA1-202ENST00000398452 ACP6Q9NPH0 428 aa15.07■□□□□ 0
SKA1-202ENST00000398452 FAM49BQ9NUQ9 324 aa15.07■□□□□ 0
SKA1-202ENST00000398452 MARCH5Q9NX47 278 aa15.07■□□□□ 0
SKA1-202ENST00000398452 HCSTQ9UBK5 93 aa15.07■□□□□ 0
SKA1-202ENST00000398452 HMGXB4Q9UGU5 601 aa15.07■□□□□ 0
SKA1-202ENST00000398452 NAGPAQ9UK23 515 aa15.07■□□□□ 0
SKA1-202ENST00000398452 PYCARDQ9ULZ3 195 aa15.07■□□□□ 0
SKA1-202ENST00000398452 PCDHGC3Q9UN70 934 aa15.07■□□□□ 0
SKA1-202ENST00000398452 SSX2IPQ9Y2D8 614 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms