RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 ARHGEF3Q9NR81 526 aa14.94□□□□□ -0.02
SEC13-204ENST00000397099 ABI2Q9NYB9 513 aaPredicted RBP14.94□□□□□ -0.02
SEC13-204ENST00000397099 EHD2Q9NZN4 543 aa14.94□□□□□ -0.02
SEC13-204ENST00000397099 UXTQ9UBK9 157 aaPredicted RBP14.94□□□□□ -0.02
SEC13-204ENST00000397099 CSH1P0DML2 217 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 CSH2P0DML3 217 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 TRIM21P19474 475 aaKnown RBP14.93□□□□□ -0.02
SEC13-204ENST00000397099 WARSP23381 471 aaKnown RBP14.93□□□□□ -0.02
SEC13-204ENST00000397099 WDR72Q3MJ13 1102 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 COBLL1Q53SF7 1204 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 LMBRD2Q68DH5 695 aaPredicted RBP14.93□□□□□ -0.02
SEC13-204ENST00000397099 C1orf228Q6PIY5 440 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 INTS8Q75QN2 995 aaKnown RBP14.93□□□□□ -0.02
SEC13-204ENST00000397099 LRRTM3Q86VH5 581 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 TMC8Q8IU68 726 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 SPATA2LQ8IUW3 424 aaPredicted RBP14.93□□□□□ -0.02
SEC13-204ENST00000397099 DTWD2Q8NBA8 298 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 TAF4BQ92750 862 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 IRF7Q92985 503 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 TCEAL4Q96EI5 215 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 NELL2Q99435 816 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 KXD1Q9BQD3 176 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 RPP25Q9BUL9 199 aaKnown RBP14.93□□□□□ -0.02
SEC13-204ENST00000397099 LRRC3Q9BY71 257 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 SNX25Q9H3E2 840 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 SLITRK6Q9H5Y7 841 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 GDPD2Q9HCC8 539 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 OBP2AQ9NY56 170 aa14.93□□□□□ -0.02
SEC13-204ENST00000397099 NUP210Q8TEM1 1887 aaPredicted RBP14.93□□□□□ -0.02
SEC13-204ENST00000397099 GLULP15104 373 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 PSMC3P17980 439 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 PPP1R2P41236 205 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 CCR2P41597 374 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 MAGEA9P43362 315 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 MLLT6P55198 1093 aaPredicted RBP14.92□□□□□ -0.02
SEC13-204ENST00000397099 STARD6P59095 220 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 GPC5P78333 572 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 BIRC3Q13489 604 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 EDRF1Q3B7T1 1238 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 FAM78AQ5JUQ0 283 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 FAM171BQ6P995 826 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 VSTM1Q6UX27 236 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 CCDC105Q8IYK2 499 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 HS6ST3Q8IZP7 471 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 SHKBP1Q8TBC3 707 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 ZSCAN18Q8TBC5 510 aaPredicted RBP14.92□□□□□ -0.02
SEC13-204ENST00000397099 TRMT2BQ96GJ1 504 aaKnown RBP14.92□□□□□ -0.02
SEC13-204ENST00000397099 MSANTD3Q96H12 275 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 CHAMP1Q96JM3 812 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 TRMT61BQ9BVS5 477 aaKnown RBP14.92□□□□□ -0.02
SEC13-204ENST00000397099 OSBPL6Q9BZF3 934 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 DNAI2Q9GZS0 605 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 ATXN3LQ9H3M9 355 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 CACNA1HO95180 2353 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 DENND4CQ5VZ89 1909 aa14.92□□□□□ -0.02
SEC13-204ENST00000397099 A0A1W2PRU2 124 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 MOSPD3O75425 235 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 CST3P01034 146 aaPredicted RBP14.91□□□□□ -0.02
SEC13-204ENST00000397099 PRR29P0C7W0 189 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 KRT13P13646 458 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 ATF6P18850 670 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 NR2F2P24468 414 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 GABRR2P28476 465 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 PSMC2P35998 433 aaKnown RBP14.91□□□□□ -0.02
SEC13-204ENST00000397099 GNL1P36915 607 aaPredicted RBP14.91□□□□□ -0.02
SEC13-204ENST00000397099 SNW1Q13573 536 aaKnown RBP14.91□□□□□ -0.02
SEC13-204ENST00000397099 NCOA4Q13772 614 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 TEAD2Q15562 447 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 SGSM1Q2NKQ1 1148 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 CEP135Q66GS9 1140 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 TANGO2Q6ICL3 276 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 MFSD6LQ8IWD5 586 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 ENGASEQ8NFI3 743 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 MYCBPAPQ8TBZ2 947 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 KBTBD7Q8WVZ9 684 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 PKMYT1Q99640 499 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 SYT15Q9BQS2 421 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 MKNK1Q9BUB5 465 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 MAGEC2Q9UBF1 373 aaPredicted RBP14.91□□□□□ -0.02
SEC13-204ENST00000397099 GTF3C4Q9UKN8 822 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 MRPS17Q9Y2R5 130 aaKnown RBP14.91□□□□□ -0.02
SEC13-204ENST00000397099 SIT1Q9Y3P8 196 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 WDR87Q6ZQQ6 2873 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 VPS13AQ96RL7 3174 aa14.91□□□□□ -0.02
SEC13-204ENST00000397099 LRRIQ3A6PVS8 624 aaPredicted RBP14.9□□□□□ -0.02
SEC13-204ENST00000397099 NCAM2O15394 837 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 STX10O60499 249 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 DCNP07585 359 aaKnown RBP14.9□□□□□ -0.02
SEC13-204ENST00000397099 FCARP24071 287 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 PDE6CP51160 858 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 ANGPT1Q15389 498 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 MLF2Q15773 248 aaPredicted RBP14.9□□□□□ -0.02
SEC13-204ENST00000397099 ZNF699Q32M78 642 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 ZACNQ401N2 412 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 SLC44A4Q53GD3 710 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 ZNF667Q5HYK9 610 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 ZNF658Q5TYW1 1059 aaPredicted RBP14.9□□□□□ -0.02
SEC13-204ENST00000397099 GAREM2Q75VX8 874 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 FRMD5Q7Z6J6 570 aa14.9□□□□□ -0.02
SEC13-204ENST00000397099 TTC9BQ8N6N2 239 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms